Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster. by Raquel S Linheiro, Casey M Bergman

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Photogenic Flies - A review of Chyb and Gompel's Atlas of Drosophila Morphology: Wild-type and Classical Mutants by Andreas eProkop, Casey M. Bergman

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Strain-specific and pooled genome sequences for populations of Drosophila melanogaster from three continents. [v1; ref status: indexed, http://f1000r.es/515] by Casey M. Bergman, Penelope R. Haddrill

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McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data by Michael G. Nelson, Raquel S. Linheiro, Casey M. Bergman

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pubmed2ensembl: a resource for mining the biological literature on genes. by Joachim Baran, Martin Gerner, Maximilian Haeussler, Goran Nenadic, Casey M Bergman

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Phased Diploid Genome Assemblies for Three Strains of Candida albicans from Oak Trees by Jennafer A. P. Hamlin, Guilherme B. Dias, Casey M. Bergman, Douda Bensasson

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Genomic analysis of P elements in natural populations of Drosophila melanogaster by Casey M. Bergman, Shunhua Han, Michael G. Nelson, Vladyslav Bondarenko, Iryna Kozeretska

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Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination. by Wioletta Czaja, Douda Bensasson, Hyo Won Ahn, David J Garfinkel, Casey M Bergman

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Evolutionary systems biology of amino acid biosynthetic cost in yeast. by Michael D Barton, Daniela Delneri, Stephen G Oliver, Magnus Rattray, Casey M Bergman

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Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast by Jingxuan Chen, Preston J. Basting, Shunhua Han, David J. Garfinkel, Casey M. Bergman

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Correction: Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast. by Michael D. Barton, Daniela Delneri, Stephen G. Oliver, Magnus Rattray, Casey M. Bergman

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Bringing PLOS Genetics Editors to Preprint Servers. by Gregory S Barsh, Casey M Bergman, Christopher D Brown, Nadia D Singh, Gregory P Copenhaver

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Functional evolution of a cis-regulatory module. by Michael Z Ludwig, Arnar Palsson, Elena Alekseeva, Casey M Bergman, Janaki Nathan, Martin Kreitman

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Combined evidence annotation of transposable elements in genome sequences. by Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere

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Trapping a somatic endogenous retrovirus into a germline piRNA cluster immunizes the germline against further invasion by Céline Duc, Marianne Yoth, Silke Jensen, Nolwenn Mouniée, Casey M. Bergman, Chantal Vaury, Emilie Brasset

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Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster. by Mark F Richardson, Lucy A Weinert, John J Welch, Raquel S Linheiro, Michael M Magwire, Francis M Jiggins, Casey M Bergman

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Principles of genome evolution in the Drosophila melanogaster species group. by José M Ranz, Damien Maurin, Yuk S Chan, Marcin von Grotthuss, LaDeana W Hillier, John Roote, Michael Ashburner, Casey M Bergman

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Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus by Guilherme B. Dias, Musaad A. Altammami, Hamadttu A. F. El-Shafie, Fahad M. Alhoshani, Mohamed B. Al-Fageeh, Casey M. Bergman, Manee M. Manee

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Complete mitochondrial genome of the longhorn date palm stem borer Jebusaea hammerschmidtii (Reiche, 1878) by Guilherme B. Dias, Ahmad M. Aldossary, Hamadttu A.F. El-Shafie, Fahad M. Alhoshani, Mohamed B. Al-Fageeh, Casey M. Bergman, Manee M. Manee

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A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts by Matthew Chung, Preston J. Basting, Rayanna S. Patkus, Alexandra Grote, Ashley N. Luck, Elodie Ghedin, Barton E. Slatko, Michelle Michalski, Jeremy M. Foster, Casey M. Bergman, Julie C. Dunning Hotopp

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