Realistic three dimensional fitness landscapes generated by self organizing maps for the analysis of experimental HIV-1 evolution. by Ramón Lorenzo-Redondo, Soledad Delgado, Federico Morán, Cecilio Lopez-Galindez

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HIV-1 Dual Infected LTNP-EC Patients Developed an Unexpected Antibody Cross-Neutralizing Activity. by Maria Pernas, Victor Sanchez-Merino, Concepcion Casado, Alberto Merino-Mansilla, Isabel Olivares, Eloisa Yuste, Cecilio Lopez-Galindez

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Initial fitness recovery of HIV-1 is associated with quasispecies heterogeneity and can occur without modifications in the consensus sequence. by Antonio V Bordería, Ramon Lorenzo-Redondo, Maria Pernas, Concepción Casado, Tamara Alvaro, Esteban Domingo, Cecilio Lopez-Galindez

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Host and viral genetic correlates of clinical definitions of HIV-1 disease progression. by Concepción Casado, Sara Colombo, Andri Rauch, Raquel Martínez, Huldrych F Günthard, Soledad Garcia, Carmen Rodríguez, Jorge Del Romero, Amalio Telenti, Cecilio López-Galíndez

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Viremic HIV infected individuals with high CD4 T cells and functional envelope proteins show anti-gp41 antibodies with unique specificity and function. by Marta Curriu, Hughes Fausther-Bovendo, María Pernas, Marta Massanella, Jorge Carrillo, Cecilia Cabrera, Cecilio López-Galíndez, Bonaventura Clotet, Patrice Debré, Vincent Vieillard, Julià Blanco

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A Two-Level, Intramutant Spectrum Haplotype Profile of Hepatitis C Virus Revealed by Self-Organized Maps by Soledad Delgado, Celia Perales, Carlos García-Crespo, María Eugenia Soria, Isabel Gallego, Ana Isabel de Ávila, Brenda Martínez-González, Lucía Vázquez-Sirvent, Cecilio López-Galíndez, Federico Morán, Esteban Domingo

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Identification of a cluster of HIV-1 controllers infected with low replicating viruses. by Concepción Casado, Maria Pernas, Virginia Sandonis, Tamara Alvaro-Cifuentes, Isabel Olivares, Rosa Fuentes, Lorena Martínez-Prats, Eulalia Grau, Lidia Ruiz, Rafael Delgado, Carmen Rodríguez, Jorge del Romero, Cecilio López-Galíndez

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Contribution of the HIV-1 Envelope Glycoprotein to AIDS Pathogenesis and Clinical Progression by Agustín Valenzuela-Fernández, Romina Cabrera-Rodríguez, Concha Casado, Silvia Pérez-Yanes, María Pernas, Jonay García-Luis, Silvia Marfil, Isabel Olivares, Judith Estévez-Herrera, Rodrigo Trujillo-González, Julià Blanco, Cecilio Lopez-Galindez

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Low-replicating viruses and strong anti-viral immune response associated with prolonged disease control in a superinfected HIV-1 LTNP elite controller. by María Pernas, Concepción Casado, Carolina Arcones, Anuska Llano, Víctor Sánchez-Merino, Beatriz Mothe, José L Vicario, Eulalia Grau, Lidia Ruiz, Jorge Sánchez, Amalio Telenti, Eloísa Yuste, Christian Brander, Cecilio López- Galíndez

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The Characteristics of the HIV-1 Env Glycoprotein Are Linked With Viral Pathogenesis by Silvia Pérez-Yanes, María Pernas, Silvia Marfil, Romina Cabrera-Rodríguez, Raquel Ortiz, Víctor Urrea, Carla Rovirosa, Judith Estévez-Herrera, Isabel Olivares, Concepción Casado, Cecilio Lopez-Galindez, Julià Blanco, Julià Blanco, Agustín Valenzuela-Fernández

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Immunoescape of HIV-1 in Env-EL9 CD8 + T cell response restricted by HLA-B*14:02 in a Non progressor who lost twenty-seven years of HIV-1 control by Ana Moyano, Oscar Blanch-Lombarte, Laura Tarancon-Diez, Nuria Pedreño-Lopez, Miguel Arenas, Tamara Alvaro, Concepción Casado, Isabel Olivares, Mar Vera, Carmen Rodriguez, Jorge del Romero, Cecilio López-Galíndez, Ezequiel Ruiz-Mateos, Julia G. Prado, María Pernas

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Permanent control of HIV-1 pathogenesis in exceptional elite controllers: a model of spontaneous cure by Concepcion Casado, Cristina Galvez, Maria Pernas, Laura Tarancon-Diez, Carmen Rodriguez, Víctor Sanchez-Merino, Mar Vera, Isabel Olivares, Rebeca De Pablo-Bernal, Alberto Merino-Mansilla, Jorge Del Romero, Ramon Lorenzo-Redondo, Ezequiel Ruiz-Mateos, María Salgado, Javier Martinez-Picado, Cecilio Lopez-Galindez

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A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control by István Bartha, Jonathan M Carlson, Chanson J Brumme, Paul J McLaren, Zabrina L Brumme, Mina John, David W Haas, Javier Martinez-Picado, Judith Dalmau, Cecilio López-Galíndez, Concepción Casado, Andri Rauch, Huldrych F Günthard, Enos Bernasconi, Pietro Vernazza, Thomas Klimkait, Sabine Yerly, Stephen J O’Brien, Jennifer Listgarten, Nico Pfeifer, Christoph Lippert, Nicolo Fusi, Zoltán Kutalik, Todd M Allen, Viktor Müller, P Richard Harrigan, David Heckerman, Amalio Telenti, Jacques Fellay, for the HIV Genome-to-Genome Study and the Swiss HIV Cohort Study

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SARS-CoV-2 Mutant Spectra at Different Depth Levels Reveal an Overwhelming Abundance of Low Frequency Mutations by Brenda Martínez-González, María Eugenia Soria, Lucía Vázquez-Sirvent, Cristina Ferrer-Orta, Rebeca Lobo-Vega, Pablo Mínguez, Lorena de la Fuente, Carlos Llorens, Beatriz Soriano, Ricardo Ramos-Ruíz, Marta Cortón, Rosario López-Rodríguez, Carlos García-Crespo, Pilar Somovilla, Antoni Durán-Pastor, Isabel Gallego, Ana Isabel de Ávila, Soledad Delgado, Federico Morán, Cecilio López-Galíndez, Jordi Gómez, Luis Enjuanes, Llanos Salar-Vidal, Mario Esteban-Muñoz, Jaime Esteban, Ricardo Fernández-Roblas, Ignacio Gadea, Carmen Ayuso, Javier Ruíz-Hornillos, Nuria Verdaguer, Esteban Domingo, Celia Perales

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