Multi-modal quantification of pathway activity with MAYA by Yuna Landais, Céline Vallot

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Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis by Felix Raimundo, Celine Vallot, Jean-Philippe Vert

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A benchmark of computational pipelines for single-cell histone modification data by Félix Raimundo, Pacôme Prompsy, Jean-Philippe Vert, Céline Vallot

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Interactive analysis of single-cell epigenomic landscapes with ChromSCape by Pacôme Prompsy, Pia Kirchmeier, Justine Marsolier, Marc Deloger, Nicolas Servant, Céline Vallot

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Ordered chromatin changes and human X chromosome reactivation by cell fusion-mediated pluripotent reprogramming by Irene Cantone, Hakan Bagci, Dirk Dormann, Gopuraja Dharmalingam, Tatyana Nesterova, Neil Brockdorff, Claire Rougeulle, Celine Vallot, Edith Heard, Ronan Chaligne, Matthias Merkenschlager, Amanda G. Fisher

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Parallel derivation of isogenic human primed and naive induced pluripotent stem cells by Stéphanie Kilens, Dimitri Meistermann, Diego Moreno, Caroline Chariau, Anne Gaignerie, Arnaud Reignier, Yohann Lelièvre, Miguel Casanova, Céline Vallot, Steven Nedellec, Léa Flippe, Julie Firmin, Juan Song, Eric Charpentier, Jenna Lammers, Audrey Donnart, Nadège Marec, Wallid Deb, Audrey Bihouée, Cédric Le Caignec, Claire Pecqueur, Richard Redon, Paul Barrière, Jérémie Bourdon, Vincent Pasque, Magali Soumillon, Tarjei S. Mikkelsen, Claire Rougeulle, Thomas Fréour, Laurent David, The Milieu Intérieur Consortium

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