SARS-CoV-2 Variants Identification: Overview of Molecular Existing Methods -н Giulia Berno, Lavinia Fabeni, Giulia Matusali, Cesare Ernesto Maria Gruber, Martina Rueca, Emanuela Giombini, Anna Rosa Garbuglia

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Detection of SARS-CoV-2 Variants via Different Diagnostics Assays Based on Single-Nucleotide Polymorphism Analysis -н Eliana Specchiarello, Giulia Matusali, Fabrizio Carletti, Cesare Ernesto Maria Gruber, Lavinia Fabeni, Claudia Minosse, Emanuela Giombini, Martina Rueca, Fabrizio Maggi, Alessandra Amendola, Anna Rosa Garbuglia

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Compartmentalized Replication of SARS-Cov-2 in Upper vs. Lower Respiratory Tract Assessed by Whole Genome Quasispecies Analysis -н Martina Rueca, Barbara Bartolini, Cesare Ernesto Maria Gruber, Antonio Piralla, Fausto Baldanti, Emanuela Giombini, Francesco Messina, Luisa Marchioni, Giuseppe Ippolito, Antonino Di Caro, Maria Rosaria Capobianchi

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Molecular Genotyping of Circulating Enterovirus in the Lazio Region from 2012 to 2023 -н Martina Rueca, Francesco Vairo, Martina Spaziante, Lavinia Fabeni, Federica Forbici, Giulia Berno, Cesare Ernesto Maria Gruber, Simonetta Picone, Camilla Ajassa, Enrico Girardi, Fabrizio Maggi, Maria Beatrice Valli

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Partial N-gene target failure in the Seegene Allplex SARS-CoV-2 Master Assay as a proxy of SARS-CoV-2 BA.2.86 -н Maria Beatrice Valli, Maria Letizia Schiavone, Martina Rueca, Giulia Berno, Pietro Giorgio Spezia, Cesare Ernesto Maria Gruber, Federica Forbici, Lavinia Fabeni, Daniele Focosi, Enrico Girardi, Marcello Meledandri, Fabrizio Maggi

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Intact provirus and integration sites analysis in acute HIV-1 infection and changes after one year of early antiviral therapy -н Gabriella Rozera, Giuseppe Sberna, Giulia Berno, Cesare Ernesto Maria Gruber, Emanuela Giombini, Pietro Giorgio Spezia, Nicoletta Orchi, Vincenzo Puro, Annalisa Mondi, Enrico Girardi, Francesco Vaia, Andrea Antinori, Fabrizio Maggi, Isabella Abbate

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SARS-CoV-2 Phylogenetic Analysis, Lazio Region, Italy, February–March 2020 -н Barbara Bartolini, Martina Rueca, Cesare Ernesto Maria Gruber, Francesco Messina, Fabrizio Carletti, Emanuela Giombini, Eleonora Lalle, Licia Bordi, Giulia Matusali, Francesca Colavita, Concetta Castilletti, Francesco Vairo, Giuseppe Ippolito, Maria Rosaria Capobianchi, Antonino Di Caro

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16S rRNA gene sequencing of rectal swab in patients affected by COVID-19. -н Antonio Mazzarelli, Maria Letizia Giancola, Anna Farina, Luisa Marchioni, Martina Rueca, Cesare Ernesto Maria Gruber, Barbara Bartolini, Tommaso Ascoli Bartoli, Gaetano Maffongelli, Maria Rosaria Capobianchi, Giuseppe Ippolito, Antonino Di Caro, Emanuele Nicastri, Valerio Pazienza, INMI COVID-19 study group

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Genomic and Epidemiologic Surveillance of SARS-CoV-2 in the Pandemic Period: Sequencing Network of the Lazio Region, Italy -н Martina Rueca, Giulia Berno, Alessandro Agresta, Martina Spaziante, Cesare Ernesto Maria Gruber, Lavinia Fabeni, Emanuela Giombini, Ornella Butera, Alessandra Barca, Paola Scognamiglio, Enrico Girardi, Fabrizio Maggi, Maria Beatrice Valli, Francesco Vairo, SARS-CoV-2 Lazio Genomic Surveillance Study Group

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Treatment-Emergent Cilgavimab Resistance Was Uncommon in Vaccinated Omicron BA.4/5 Outpatients -н Cesare Ernesto Maria Gruber, Fabio Giovanni Tucci, Martina Rueca, Valentina Mazzotta, Giulia Gramigna, Alessandra Vergori, Lavinia Fabeni, Giulia Berno, Emanuela Giombini, Ornella Butera, Daniele Focosi, Ingrid Guarnetti Prandi, Giovanni Chillemi, Emanuele Nicastri, Francesco Vaia, Enrico Girardi, Andrea Antinori, Fabrizio Maggi

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Antivirals and monoclonal antibody combination therapy in haematological patients in the omicron era -н Serena Vita, Emanuela Giombini, Patrizia De Marco, Martina Rueca, Cesare Ernesto Maria Gruber, Alessia Beccacece, Laura Scorzolini, Valentina Mazzotta, Carmen Pinnetti, Priscilla Caputi, Daniele Focosi, Enrico Girardi, Andrea Antinori, Fabrizio Maggi, Alessandra D'Abramo, Emanuele Nicastri, Investigation Team Spallanzani COVID-19 case

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Fatal Outbreak in Tonkean Macaques Caused by Possibly Novel Orthopoxvirus, Italy, January 2015 -н Giusy Cardeti, Cesare Ernesto Maria Gruber, Claudia Eleni, Fabrizio Carletti, Concetta Castilletti, Giuseppe Manna, Francesca Rosone, Emanuela Giombini, Marina Selleri, Daniele Lapa, Vincenzo Puro, Antonino Di Caro, Raniero Lorenzetti, Maria Teresa Scicluna, Goffredo Grifoni, Annapaola Rizzoli, Valentina Tagliapietra, Lorenzo De Marco, Maria Rosaria Capobianchi, Gian Luca Autorino

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Molecular Characterization of Whole-Genome SARS-CoV-2 from the First Suspected Cases of the XE Variant in the Lazio Region, Italy -н Martina Rueca, Emanuela Giombini, Giulia Gramigna, Cesare Ernesto Maria Gruber, Lavinia Fabeni, Angela Corpolongo, Valentina Mazzotta, Luisella Corso, Ornella Butera, Maria Beatrice Valli, Fabrizio Carletti, Stefano Pignalosa, Francesco Vairo, Emanuele Nicastri, Andrea Antinori, Enrico Girardi, Francesco Vaia, Fabrizio Maggi, SARS CoV-2 Lazio Surveillance Study Group

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Genetic and structural characterization of dengue virus involved in the 2023 autochthonous outbreaks in central Italy -н Fabrizio Carletti, Gabriella De Carli, Pietro Giorgio Spezia, Cesare Ernesto Maria Gruber, Ingrid Guarnetti Prandi, Martina Rueca, Alessandro Agresta, Eliana Specchiarello, Lavinia Fabeni, Elisa San Giovanni, Chiara Arcuri, Martina Spaziante, Daniele Focosi, Paola Scognamiglio, Alessandra Barca, Emanuele Nicastri, Enrico Girardi, Giovanni Chillemi, Francesco Vairo, Fabrizio Maggi

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Virological and Serological Characterisation of SARS-CoV-2 Infections Diagnosed After mRNA BNT162b2 Vaccination Between December 2020 and March 2021 -н Francesca Colavita, Silvia Meschi, Cesare Ernesto Maria Gruber, Martina Rueca, Francesco Vairo, Giulia Matusali, Daniele Lapa, Emanuela Giombini, Gabriella De Carli, Martina Spaziante, Francesco Messina, Giulia Bonfiglio, Fabrizio Carletti, Eleonora Lalle, Lavinia Fabeni, Giulia Berno, Vincenzo Puro, Barbara Bartolini, Antonino Di Caro, Antonino Di Caro, Giuseppe Ippolito, Maria Rosaria Capobianchi, Maria Rosaria Capobianchi, Concetta Castilletti

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Tracking the Selective Pressure Profile and Gene Flow of SARS-CoV-2 Delta Variant in Italy from April to October 2021 and Frequencies of Key Mutations from Three Representative Ita... -н Alessandra Lo Presti, Angela Di Martino, Luigina Ambrosio, Luca De Sabato, Arnold Knijn, Gabriele Vaccari, Ilaria Di Bartolo, Stefano Morabito, Calogero Terregino, Alice Fusaro, Isabella Monne, Edoardo Giussani, Fabio Tramuto, Carmelo Massimo Maida, Walter Mazzucco, Claudio Costantino, Martina Rueca, Emanuela Giombini, Cesare Ernesto Maria Gruber, Maria Rosaria Capobianchi, Anna Teresa Palamara, Paola Stefanelli, on behalf of the Italian Genomic Laboratory Network

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B-cell-depleted patients with persistent SARS-CoV-2 infection: combination therapy or monotherapy? A real-world experience -н Alessandra D’Abramo, Serena Vita, Alessia Beccacece, Assunta Navarra, Raffaella Pisapia, Francesco Maria Fusco, Giulia Matusali, Enrico Girardi, Fabrizio Maggi, Delia Goletti, Emanuele Nicastri, ImmunoCOVID team, Tommaso Ascoli Bartoli, Nazario Bevilacqua, Angela Corpolongo, Patrizia De Marco, Maria Letizia Giancola, Gaetano Maffongelli, Andrea Mariano, Laura Scorzolini, Claudia Palazzolo, Silvia Rosati, Virginia Tomassi, Francesca Faraglia, Lavinia Fabeni, Martina Rueca, Silvia Meschi, Cesare Ernesto Maria Gruber

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