HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment gan Jordi Abante, Noushin Ghaffari, Charles D. Johnson, Aniruddha Datta

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Comparative transcriptomic analysis of germinating rice seedlings to individual and combined anaerobic and cold stress gan Ranjita Thapa, Rodante E. Tabien, Charles D. Johnson, Endang M. Septiningsih

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Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing gan Bin Tian, Shichen Wang, Timothy C. Todd, Charles D. Johnson, Guiliang Tang, Harold N. Trick

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Horn fly transcriptome data of ten populations from the southern United States with varying degrees and molecular mechanisms of pesticide resistance gan Kylie G. Bendele, Felix D. Guerrero, Kimberly H. Lohmeyer, Lane D. Foil, Richard P. Metz, Charles D. Johnson

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Transcriptome profiling of two rice varieties reveals their molecular responses under high night-time temperature. gan Wardah K Mustahsan, Yuya Liang, Abdul R Mohammed, Charles D Johnson, Endang M Septiningsih, Lee Tarpley, Michael J Thomson

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Reference-Guided De Novo Genome Assembly to Dissect a QTL Region for Submergence Tolerance Derived from Ciherang-Sub1 gan Yuya Liang, Shichen Wang, Chersty L. Harper, Nithya K. Subramanian, Rodante E. Tabien, Charles D. Johnson, Julia Bailey-Serres, Endang M. Septiningsih

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Accurate Genomic Predictions for Chronic Wasting Disease in U.S. White-Tailed Deer gan Christopher M. Seabury, David L. Oldeschulte, Eric K. Bhattarai, Dhruti Legare, Pamela J. Ferro, Richard P. Metz, Charles D. Johnson, Mitchell A. Lockwood, Tracy A. Nichols

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RNA-seq analysis reveals different drought tolerance mechanisms in two broadly adapted wheat cultivars ‘TAM 111’ and ‘TAM 112’ gan Chenggen Chu, Shichen Wang, Li Paetzold, Zhen Wang, Kele Hui, Jackie C. Rudd, Qingwu Xue, Amir M. H. Ibrahim, Richard Metz, Charles D. Johnson, Charles M. Rush, Shuyu Liu

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Mapping QTL for Yield and Its Component Traits Using Wheat (<i>Triticum aestivum</i> L.) RIL Mapping Population from TAM 113 × Gallagher gan Mustafa Cerit, Zhen Wang, Mehmet Dogan, Shuhao Yu, Jorge L. Valenzuela-Antelo, Chenggen Chu, Shichen Wang, Qingwu Xue, Amir M. H. Ibrahim, Jackie C. Rudd, Richard Metz, Charles D. Johnson, Shuyu Liu

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Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus gan Felix D. Guerrero, Noushin Ghaffari, Kylie G. Bendele, Richard P. Metz, C. Michael Dickens, Philip D. Blood, Jason Tidwell, Robert J. Miller, Adalberto A. Pérez de León, Pete D. Teel, Charles D. Johnson

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A draft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the Late Pleistocene. gan Yvette A Halley, Scot E Dowd, Jared E Decker, Paul M Seabury, Eric Bhattarai, Charles D Johnson, Dale Rollins, Ian R Tizard, Donald J Brightsmith, Markus J Peterson, Jeremy F Taylor, Christopher M Seabury

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Northern Bobwhite (Colinus virginianus) Mitochondrial Population Genomics Reveals Structure, Divergence, and Evidence for Heteroplasmy. gan Yvette A Halley, David L Oldeschulte, Eric K Bhattarai, Joshua Hill, Richard P Metz, Charles D Johnson, Steven M Presley, Rebekah E Ruzicka, Dale Rollins, Markus J Peterson, William J Murphy, Christopher M Seabury

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Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity a... gan David L. Oldeschulte, Yvette A. Halley, Miranda L. Wilson, Eric K. Bhattarai, Wesley Brashear, Joshua Hill, Richard P. Metz, Charles D. Johnson, Dale Rollins, Markus J. Peterson, Derek M. Bickhart, Jared E. Decker, John F. Sewell, Christopher M. Seabury

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Characterization of triatomine bloodmeal sources using direct Sanger sequencing and amplicon deep sequencing methods gan Sujata Balasubramanian, Rachel Curtis-Robles, Bhagath Chirra, Lisa D. Auckland, Alan Mai, Virgilio Bocanegra-Garcia, Patti Clark, Wilhelmina Clark, Mark Cottingham, Geraldine Fleurie, Charles D. Johnson, Richard P. Metz, Shichen Wang, Nicholas J. Hathaway, Jeffrey A. Bailey, Gabriel L. Hamer, Sarah A. Hamer

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Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae gan Chenxi Qiu, Huiyan Jin, Irina Vvedenskaya, Jordi Abante Llenas, Tingting Zhao, Indranil Malik, Alex M. Visbisky, Scott L. Schwartz, Ping Cui, Pavel Čabart, Kang Hoo Han, William K. M. Lai, Richard P. Metz, Charles D. Johnson, Sing-Hoi Sze, B. Franklin Pugh, Bryce E. Nickels, Craig D. Kaplan

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Genome-wide QTL mapping of yield and agronomic traits in two widely adapted winter wheat cultivars from multiple mega-environments gan Smit Dhakal, Xiaoxiao Liu, Chenggen Chu, Yan Yang, Jackie C. Rudd, Amir M.H. Ibrahim, Qingwu Xue, Ravindra N. Devkota, Jason A. Baker, Shannon A. Baker, Bryan E. Simoneaux, Geraldine B. Opena, Russell Sutton, Kirk E. Jessup, Kele Hui, Shichen Wang, Charles D. Johnson, Richard P. Metz, Shuyu Liu

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Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes gan Jan E. Janečka, Brian W. Davis, Sharmila Ghosh, Nandina Paria, Pranab J. Das, Ludovic Orlando, Mikkel Schubert, Martin K. Nielsen, Tom A. E. Stout, Wesley Brashear, Gang Li, Charles D. Johnson, Richard P. Metz, Al Muatasim Al Zadjali, Charles C. Love, Dickson D. Varner, Daniel W. Bellott, William J. Murphy, Bhanu P. Chowdhary, Terje Raudsepp

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The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901 gan Felix D. Guerrero, Kylie G. Bendele, Noushin Ghaffari, Joseph Guhlin, Kristene R. Gedye, Kevin E. Lawrence, Peter K. Dearden, Thomas W.R. Harrop, Allen C.G. Heath, Yanni Lun, Richard P. Metz, Pete Teel, Adalberto Perez de Leon, Patrick J. Biggs, William E. Pomroy, Charles D. Johnson, Philip D. Blood, Stanley E. Bellgard, Daniel M. Tompkins

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Brucella activates the host RIDD pathway to subvert BLOS1-directed immune defense gan Kelsey Michelle Wells, Kai He, Aseem Pandey, Ana Cabello, Dongmei Zhang, Jing Yang, Gabriel Gomez, Yue Liu, Haowu Chang, Xueqiang Li, Hao Zhang, Xuehuang Feng, Luciana Fachini da Costa, Richard Metz, Charles D Johnson, Cameron Lee Martin, Jill Skrobarczyk, Luc R Berghman, Kristin L Patrick, Julian Leibowitz, Allison Ficht, Sing-Hoi Sze, Jianxun Song, Xiaoning Qian, Qing-Ming Qin, Thomas A Ficht, Paul de Figueiredo

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