Daily Rapid Antigen Exit Testing to Tailor University COVID-19 Isolation Policy by Rebecca Earnest, Christine Chen, Chrispin Chaguza, Anne M. Hahn, Nathan D. Grubaugh, Madeline S. Wilson

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Assessing the global risk of typhoid outbreaks caused by extensively drug resistant Salmonella Typhi by Joseph Walker, Chrispin Chaguza, Nathan D. Grubaugh, Megan Carey, Stephen Baker, Kamran Khan, Isaac I. Bogoch, Virginia E. Pitzer

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Population genomics of Group B Streptococcus reveals the genetics of neonatal disease onset and meningeal invasion by Chrispin Chaguza, Dorota Jamrozy, Merijn W. Bijlsma, Taco W. Kuijpers, Diederik van de Beek, Arie van der Ende, Stephen D. Bentley

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Population genomics of Streptococcus mitis in UK and Ireland bloodstream infection and infective endocarditis cases by Akuzike Kalizang’oma, Damien Richard, Brenda Kwambana-Adams, Juliana Coelho, Karen Broughton, Bruno Pichon, Katie L. Hopkins, Victoria Chalker, Sandra Beleza, Stephen D. Bentley, Chrispin Chaguza, Robert S. Heyderman

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Estimating pneumococcal carriage dynamics in adults living with HIV in a mature infant pneumococcal conjugate vaccine programme in Malawi, a modelling study by Joseph Phiri, Lusako Sibale, Lukerensia Mlongoti, Ndaona Mitole, Alice Kusakala, Mercy Khwiya, Thokozani Kayembe, Edwin Lisimba, Prosperina Kapwata, Ken Malisita, Chrispin Chaguza, Daniela M. Ferreira, Deus Thindwa, Kondwani Jambo

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The population-level impact of Enterococcus faecalis genetics on intestinal colonization and extraintestinal infection by Chrispin Chaguza, Anna K. Pöntinen, Janetta Top, Sergio Arredondo-Alonso, Ana R. Freitas, Carla Novais, Carmen Torres, Stephen D. Bentley, Luisa Peixe, Teresa M. Coque, Rob J. L. Willems, Jukka Corander

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Genetic markers associated with host status and clonal expansion of Group B Streptococcus in the Netherlands by Uzma Basit Khan, Victoria Dyster, Chrispin Chaguza, Nina M. van Sorge, Nina M. van Sorge, Diederik van de Beek, Wing Kit Man, Stephen D. Bentley, Merijn W. Bijlsma, Merijn W. Bijlsma, Dorota Jamrozy

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DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus by Chantal B. F. Vogels, Verity Hill, Mallery I. Breban, Chrispin Chaguza, Lauren M. Paul, Afeez Sodeinde, Emma Taylor-Salmon, Isabel M. Ott, Mary E. Petrone, Dennis Dijk, Marcel Jonges, Matthijs R. A. Welkers, Timothy Locksmith, Yibo Dong, Namratha Tarigopula, Omer Tekin, Sarah Schmedes, Sylvia Bunch, Natalia Cano, Rayah Jaber, Charles Panzera, Ian Stryker, Julieta Vergara, Rebecca Zimler, Edgar Kopp, Lea Heberlein, Kaylee S. Herzog, Joseph R. Fauver, Andrea M. Morrison, Scott F. Michael, Nathan D. Grubaugh

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Genomic insights into the 2022–2023Vibrio cholerae outbreak in Malawi by Chrispin Chaguza, Innocent Chibwe, David Chaima, Patrick Musicha, Latif Ndeketa, Watipaso Kasambara, Chimwemwe Mhango, Upendo L. Mseka, Joseph Bitilinyu-Bangoh, Bernard Mvula, Wakisa Kipandula, Patrick Bonongwe, Richard J. Munthali, Selemani Ngwira, Chikondi A. Mwendera, Akuzike Kalizang’oma, Kondwani C. Jambo, Dzinkambani Kambalame, Arox W. Kamng’ona, A. Duncan Steele, Annie Chauma-Mwale, Daniel Hungerford, Matthew Kagoli, Martin M. Nyaga, Queen Dube, Neil French, Chisomo L. Msefula, Nigel A. Cunliffe, Khuzwayo C. Jere

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Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean by Emma Taylor-Salmon, Verity Hill, Lauren M. Paul, Robert T. Koch, Mallery I. Breban, Chrispin Chaguza, Afeez Sodeinde, Joshua L. Warren, Sylvia Bunch, Natalia Cano, Marshall Cone, Sarah Eysoldt, Alezaundra Garcia, Nicadia Gilles, Andrew Hagy, Lea Heberlein, Rayah Jaber, Elizabeth Kassens, Pamela Colarusso, Amanda Davis, Samantha Baudin, Edhelene Rico, Álvaro Mejía-Echeverri, Blake Scott, Danielle Stanek, Rebecca Zimler, Jorge L. Muñoz-Jordán, Gilberto A. Santiago, Laura E. Adams, Gabriela Paz-Bailey, Melanie Spillane, Volha Katebi, Robert Paulino-Ramírez, Sayira Mueses, Armando Peguero, Nelissa Sánchez, Francesca F. Norman, Juan-Carlos Galán, Ralph Huits, Davidson H. Hamer, Chantal B. F. Vogels, Andrea Morrison, Scott F. Michael, Nathan D. Grubaugh

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Development of an amplicon-based sequencing approach in response to the global emergence of mpox. by Nicholas F G Chen, Chrispin Chaguza, Luc Gagne, Matthew Doucette, Sandra Smole, Erika Buzby, Joshua Hall, Stephanie Ash, Rachel Harrington, Seana Cofsky, Selina Clancy, Curtis J Kapsak, Joel Sevinsky, Kevin Libuit, Daniel J Park, Peera Hemarajata, Jacob M Garrigues, Nicole M Green, Sean Sierra-Patev, Kristin Carpenter-Azevedo, Richard C Huard, Claire Pearson, Kutluhan Incekara, Christina Nishimura, Jian Ping Huang, Emily Gagnon, Ethan Reever, Jafar Razeq, Anthony Muyombwe, Vítor Borges, Rita Ferreira, Daniel Sobral, Silvia Duarte, Daniela Santos, Luís Vieira, João Paulo Gomes, Carly Aquino, Isabella M Savino, Karinda Felton, Moneeb Bajwa, Nyjil Hayward, Holly Miller, Allison Naumann, Ria Allman, Neel Greer, Amary Fall, Heba H Mostafa, Martin P McHugh, Daniel M Maloney, Rebecca Dewar, Juliet Kenicer, Abby Parker, Katharine Mathers, Jonathan Wild, Seb Cotton, Kate E Templeton, George Churchwell, Philip A Lee, Maria Pedrosa, Brenna McGruder, Sarah Schmedes, Matthew R Plumb, Xiong Wang, Regina Bones Barcellos, Fernanda M S Godinho, Richard Steiner Salvato, Aimee Ceniseros, Mallery I Breban, Nathan D Grubaugh, Glen R Gallagher, Chantal B F Vogels

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