Read length versus depth of coverage for viral quasispecies reconstruction. by Osvaldo Zagordi, Martin Däumer, Christian Beisel, Niko Beerenwinkel

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High-Resolution Profiling of Drosophila Replication Start Sites Reveals a DNA Shape and Chromatin Signature of Metazoan Origins by Federico Comoglio, Tommy Schlumpf, Virginia Schmid, Remo Rohs, Christian Beisel, Renato Paro

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Tracking and characterization of partial and full epithelial-mesenchymal transition cells in a mouse model of metastatic breast cancer by Fabiana Lüönd, Natascha Santacroce, Christian Beisel, Laurent Guérard, Thomas R. Bürglin, Gerhard Christofori, Nami Sugiyama

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RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes by Jeremias N. Brand, R. Axel W. Wiberg, Robert Pjeta, Philip Bertemes, Christian Beisel, Peter Ladurner, Lukas Schärer

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Collection and preprocessing of fine needle aspirate patient samples for single cell profiling and data analysis by Aizhan Tastanova, Egle Ramelyte, Zsolt Balázs, Ulrike Menzel, Christian Beisel, Michael Krauthammer, Reinhard Dummer, Mitchell Paul Levesque

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Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping by Simon Höllerer, Laetitia Papaxanthos, Anja Cathrin Gumpinger, Katrin Fischer, Christian Beisel, Karsten Borgwardt, Yaakov Benenson, Markus Jeschek

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A High-Density Map for Navigating the Human Polycomb Complexome by Simon Hauri, Federico Comoglio, Makiko Seimiya, Moritz Gerstung, Timo Glatter, Klaus Hansen, Ruedi Aebersold, Renato Paro, Matthias Gstaiger, Christian Beisel

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A switch in transcription and cell fate governs the onset of an epigenetically-deregulated tumor in Drosophila by Joana Torres, Remo Monti, Ariane L Moore, Makiko Seimiya, Yanrui Jiang, Niko Beerenwinkel, Christian Beisel, Jorge V Beira, Renato Paro

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Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity by Fabrizio Menardo, Chloé Loiseau, Daniela Brites, Mireia Coscolla, Sebastian M. Gygli, Liliana K. Rutaihwa, Andrej Trauner, Christian Beisel, Sonia Borrell, Sebastien Gagneux

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Detection of isoforms and genomic alterations by high-throughput full-length single-cell RNA sequencing in ovarian cancer by Arthur Dondi, Ulrike Lischetti, Francis Jacob, Franziska Singer, Nico Borgsmüller, Ricardo Coelho, Tumor Profiler Consortium, Viola Heinzelmann-Schwarz, Christian Beisel, Niko Beerenwinkel

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Statistical tests for intra-tumour clonal co-occurrence and exclusivity. by Jack Kuipers, Ariane L Moore, Katharina Jahn, Peter Schraml, Feng Wang, Kiyomi Morita, P Andrew Futreal, Koichi Takahashi, Christian Beisel, Holger Moch, Niko Beerenwinkel

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Single‐cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction by Andrzej J Rzepiela, Souvik Ghosh, Jeremie Breda, Arnau Vina‐Vilaseca, Afzal P Syed, Andreas J Gruber, Katja Eschbach, Christian Beisel, Erik van Nimwegen, Mihaela Zavolan

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Dynamic thresholding and tissue dissociation optimization for CITE-seq identifies differential surface protein abundance in metastatic melanoma by Ulrike Lischetti, Aizhan Tastanova, Franziska Singer, Linda Grob, Matteo Carrara, Phil F. Cheng, Julia M. Martínez Gómez, Federica Sella, Veronika Haunerdinger, Christian Beisel, Mitchell P. Levesque

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Expression and Mutation Patterns of PBRM1, BAP1 and SETD2 Mirror Specific Evolutionary Subtypes in Clear Cell Renal Cell Carcinoma by Svenja Bihr, Riuko Ohashi, Ariane L. Moore, Jan H. Rüschoff, Christian Beisel, Thomas Hermanns, Axel Mischo, Claudia Corrò, Jörg Beyer, Niko Beerenwinkel, Holger Moch, Peter Schraml

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Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development. by Sònia Borrell, Andrej Trauner, Daniela Brites, Leen Rigouts, Chloe Loiseau, Mireia Coscolla, Stefan Niemann, Bouke De Jong, Dorothy Yeboah-Manu, Midori Kato-Maeda, Julia Feldmann, Miriam Reinhard, Christian Beisel, Sebastien Gagneux

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SwissMTB: establishing comprehensive molecular cancer diagnostics in Swiss clinics by Franziska Singer, Anja Irmisch, Nora C. Toussaint, Linda Grob, Jochen Singer, Thomas Thurnherr, Niko Beerenwinkel, Mitchell P. Levesque, Reinhard Dummer, Luca Quagliata, Sacha I. Rothschild, Andreas Wicki, Christian Beisel, Daniel J. Stekhoven

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Detection and Genome Sequencing of SARS-CoV-2 in a Domestic Cat with Respiratory Signs in Switzerland by Julia Klaus, Marina L. Meli, Barbara Willi, Sarah Nadeau, Christian Beisel, Tanja Stadler, ETH SARS-CoV-2 Sequencing Team, Herman Egberink, Shan Zhao, Hans Lutz, Barbara Riond, Nina Rösinger, Hanspeter Stalder, Sandra Renzullo, Regina Hofmann-Lehmann

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Live slow-frozen human tumor tissues viable for 2D, 3D, ex vivo cultures and single-cell RNAseq by Gaetana Restivo, Aizhan Tastanova, Zsolt Balázs, Federica Panebianco, Maren Diepenbruck, Caner Ercan, Bodgan-T. Preca, Jürg Hafner, Walter P. Weber, Christian Kurzeder, Marcus Vetter, Simone Münst Soysal, Christian Beisel, Mohamed Bentires-Alj, Salvatore Piscuoglio, Michael Krauthammer, Mitchell P. Levesque

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The relative transmission fitness of multidrug-resistant Mycobacterium tuberculosis in a drug resistance hotspot by Chloé Loiseau, Etthel M. Windels, Sebastian M. Gygli, Levan Jugheli, Nino Maghradze, Daniela Brites, Amanda Ross, Galo Goig, Miriam Reinhard, Sonia Borrell, Andrej Trauner, Anna Dötsch, Rusudan Aspindzelashvili, Rebecca Denes, Klaus Reither, Christian Beisel, Nestani Tukvadze, Zaza Avaliani, Tanja Stadler, Sebastien Gagneux

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Detection of SARS-CoV-2 RNA in a Zoo-Kept Red Fox (<i>Vulpes vulpes</i>) by Tatjana Chan, Julia Ginders, Evelyn Kuhlmeier, Marina L. Meli, Eva Bönzli, Theres Meili, Julia Hüttl, Jean-Michel Hatt, Karin Hindenlang Clerc, Anja Kipar, Fabia Wyss, Christian Wenker, Marie-Pierre Ryser-Degiorgis, Cecilia Valenzuela Agüí, Christian Urban, Christian Beisel, Tanja Stadler, Regina Hofmann-Lehmann

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