Advances in Cryptococcus genomics: insights into the evolution of pathogenesis by Christina A Cuomo, Johanna Rhodes, Christopher A Desjardins

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Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: progress, promise, and challenges by Keira A. Cohen, Abigail L. Manson, Christopher A. Desjardins, Thomas Abeel, Ashlee M. Earl

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Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans. by Kirthi C Reddy, Tal Dror, Ryan S Underwood, Guled A Osman, Corrina R Elder, Christopher A Desjardins, Christina A Cuomo, Michalis Barkoulas, Emily R Troemel

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Fatal Nosocomial MDR TB Identified through Routine Genetic Analysis and Whole-Genome Sequencing by O. Martin Williams, Thomas Abeel, Nicola Casali, Keira Cohen, Alex S. Pym, Sarah B. Mungall, Christopher A. Desjardins, Anindo Banerjee, Francis Drobniewski, Ashlee M. Earl, Graham S. Cooke

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Genome Evolution and Innovation across the Four Major Lineages of <named-content content-type="genus-species">Cryptococcus gattii</named-content> by Rhys A. Farrer, Christopher A. Desjardins, Sharadha Sakthikumar, Sharvari Gujja, Sakina Saif, Qiandong Zeng, Yuan Chen, Kerstin Voelz, Joseph Heitman, Robin C. May, Matthew C. Fisher, Christina A. Cuomo

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Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction. by Kathryn Winglee, Abigail Manson McGuire, Mamoudou Maiga, Thomas Abeel, Terrance Shea, Christopher A Desjardins, Bassirou Diarra, Bocar Baya, Moumine Sanogo, Souleymane Diallo, Ashlee M Earl, William R Bishai

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Evolutionary dynamics of the accessory genome of Listeria monocytogenes. by Henk C den Bakker, Christopher A Desjardins, Allison D Griggs, Joseph E Peters, Qiandong Zeng, Sarah K Young, Chinnappa D Kodira, Chandri Yandava, Theresa A Hepburn, Brian J Haas, Bruce W Birren, Martin Wiedmann

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Titan cells formation in Cryptococcus neoformans is finely tuned by environmental conditions and modulated by positive and negative genetic regulators. by Benjamin Hommel, Liliane Mukaremera, Radames J B Cordero, Carolina Coelho, Christopher A Desjardins, Aude Sturny-Leclère, Guilhem Janbon, John R Perfect, James A Fraser, Arturo Casadevall, Christina A Cuomo, Françoise Dromer, Kirsten Nielsen, Alexandre Alanio

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Comparative Genomics of Vancomycin-Resistant <named-content content-type="genus-species">Staphylococcus aureus</named-content> Strains and Their Positions within the Clade Most Com... by Veronica N. Kos, Christopher A. Desjardins, Allison Griggs, Gustavo Cerqueira, Andries Van Tonder, Matthew T. G. Holden, Paul Godfrey, Kelli L. Palmer, Kip Bodi, Emmanuel F. Mongodin, Jennifer Wortman, Michael Feldgarden, Trevor Lawley, Steven R. Gill, Brian J. Haas, Bruce Birren, Michael S. Gilmore

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Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections by Timothy J. Straub, Wen-Chi Chou, Abigail L. Manson, Henry L. Schreiber, Bruce J. Walker, Christopher A. Desjardins, Sinéad B. Chapman, Kerrie L. Kaspar, Orsalem J. Kahsai, Elizabeth Traylor, Karen W. Dodson, Meredith A. J. Hullar, Scott J. Hultgren, Christina Khoo, Ashlee M. Earl

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Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development. by Jason W Holder, Jil C Ulrich, Anthony C DeBono, Paul A Godfrey, Christopher A Desjardins, Jeremy Zucker, Qiandong Zeng, Alex L B Leach, Ion Ghiviriga, Christine Dancel, Thomas Abeel, Dirk Gevers, Chinnappa D Kodira, Brian Desany, Jason P Affourtit, Bruce W Birren, Anthony J Sinskey

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Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection by Mark G. Young, Timothy J. Straub, Colin J. Worby, Hayden C. Metsky, Andreas Gnirke, Ryan A. Bronson, Lucas R. van Dijk, Christopher A. Desjardins, Christian Matranga, James Qu, Jesús Bazan Villicana, Philippe Azimzadeh, Andrew Kau, Karen W. Dodson, Henry L. Schreiber, Abigail L. Manson, Scott J. Hultgren, Ashlee M. Earl

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The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia. by José F Muñoz, Gregory M Gauthier, Christopher A Desjardins, Juan E Gallo, Jason Holder, Thomas D Sullivan, Amber J Marty, John C Carmen, Zehua Chen, Li Ding, Sharvari Gujja, Vincent Magrini, Elizabeth Misas, Makedonka Mitreva, Margaret Priest, Sakina Saif, Emily A Whiston, Sarah Young, Qiandong Zeng, William E Goldman, Elaine R Mardis, John W Taylor, Juan G McEwen, Oliver K Clay, Bruce S Klein, Christina A Cuomo

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Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal. by Keira A Cohen, Thomas Abeel, Abigail Manson McGuire, Christopher A Desjardins, Vanisha Munsamy, Terrance P Shea, Bruce J Walker, Nonkqubela Bantubani, Deepak V Almeida, Lucia Alvarado, Sinéad B Chapman, Nomonde R Mvelase, Eamon Y Duffy, Michael G Fitzgerald, Pamla Govender, Sharvari Gujja, Susanna Hamilton, Clinton Howarth, Jeffrey D Larimer, Kashmeel Maharaj, Matthew D Pearson, Margaret E Priest, Qiandong Zeng, Nesri Padayatchi, Jacques Grosset, Sarah K Young, Jennifer Wortman, Koleka P Mlisana, Max R O'Donnell, Bruce W Birren, William R Bishai, Alexander S Pym, Ashlee M Earl

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Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis. by Christopher A Desjardins, Mia D Champion, Jason W Holder, Anna Muszewska, Jonathan Goldberg, Alexandre M Bailão, Marcelo Macedo Brigido, Márcia Eliana da Silva Ferreira, Ana Maria Garcia, Marcin Grynberg, Sharvari Gujja, David I Heiman, Matthew R Henn, Chinnappa D Kodira, Henry León-Narváez, Larissa V G Longo, Li-Jun Ma, Iran Malavazi, Alisson L Matsuo, Flavia V Morais, Maristela Pereira, Sabrina Rodríguez-Brito, Sharadha Sakthikumar, Silvia M Salem-Izacc, Sean M Sykes, Marcus Melo Teixeira, Milene C Vallejo, Maria Emília Machado Telles Walter, Chandri Yandava, Sarah Young, Qiandong Zeng, Jeremy Zucker, Maria Sueli Felipe, Gustavo H Goldman, Brian J Haas, Juan G McEwen, Gustavo Nino-Vega, Rosana Puccia, Gioconda San-Blas, Celia Maria de Almeida Soares, Bruce W Birren, Christina A Cuomo

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