Inferring HIV transmission dynamics from phylogenetic sequence relationships. Dahkki Christopher D Pilcher, Joseph K Wong, Satish K Pillai

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Seroadaptive practices: association with HIV acquisition among HIV-negative men who have sex with men. Dahkki Snigdha Vallabhaneni, Xin Li, Eric Vittinghoff, Deborah Donnell, Christopher D Pilcher, Susan P Buchbinder

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Activation associated ERK1/2 signaling impairments in CD8+ T cells co-localize with blunted polyclonal and HIV-1 specific effector functions in early untreated HIV-1 infection. Dahkki Timothy Q Crawford, Fredrick M Hecht, Christopher D Pilcher, Lishomwa C Ndhlovu, Jason D Barbour

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Challenges to the performance of current HIV diagnostic assays and the need for centralized specimen archives: a review of the Consortium for the Evaluation and Performance of HIV... Dahkki Shelley N. Facente, Michael P. Busch, Eduard Grebe, Christopher D. Pilcher, Alex Welte, Brian Rice, Gary Murphy

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Changes in seroadaptive practices from before to after diagnosis of recent HIV infection among men who have sex with men. Dahkki Snigdha Vallabhaneni, J Jeff McConnell, Lisa Loeb, Wendy Hartogensis, Fredrick M Hecht, Robert M Grant, Christopher D Pilcher

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Patient perspectives on the experience of being newly diagnosed with HIV in the emergency department/urgent care clinic of a public hospital. Dahkki Katerina A Christopoulos, Amina D Massey, Andrea M Lopez, C Bradley Hare, Mallory O Johnson, Christopher D Pilcher, Hegla Fielding, Carol Dawson-Rose

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Performance of risk-based criteria for targeting acute HIV screening in San Francisco. Dahkki Shelley N Facente, Christopher D Pilcher, Wendy E Hartogensis, Jeffrey D Klausner, Susan S Philip, Brian Louie, Katerina A Christopoulos, Teri Dowling, Grant N Colfax

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Newly Exerted T Cell Pressures on Mutated Epitopes following Transmission Help Maintain Consensus HIV-1 Sequences. Dahkki Emily M Eriksson, Teri Liegler, Chris E Keh, Annika C Karlsson, Sara J Holditch, Christopher D Pilcher, Lisa Loeb, Douglas F Nixon, Frederick M Hecht

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Transmitted drug resistance in persons with acute/early HIV-1 in San Francisco, 2002-2009. Dahkki Vivek Jain, Teri Liegler, Eric Vittinghoff, Wendy Hartogensis, Peter Bacchetti, Lauren Poole, Lisa Loeb, Christopher D Pilcher, Robert M Grant, Steven G Deeks, Frederick M Hecht

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Efficient Identification of HIV Serodiscordant Couples by Existing HIV Testing Programs in South Brazil. Dahkki Christopher D Pilcher, Claudia Alquati Bisol, Machline Paim Paganella, Snigdha Vallabhaneni, Leonardo Rapone da Motta, Sergio Kakuta Kato, Rosa Dea Sperhacke, Esper G Kallas, Frederick M Hecht, Ricardo Sobhie Diaz

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Performance of rapid point-of-care and laboratory tests for acute and established HIV infection in San Francisco. Dahkki Christopher D Pilcher, Brian Louie, Shelley Facente, Sheila Keating, John Hackett, Ana Vallari, Chris Hall, Teri Dowling, Michael P Busch, Jeffrey D Klausner, Frederick M Hecht, Sally Liska, Mark W Pandori

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Interpreting HIV diagnostic histories into infection time estimates: analytical framework and online tool Dahkki Eduard Grebe, Shelley N. Facente, Jeremy Bingham, Christopher D. Pilcher, Andrew Powrie, Jarryd Gerber, Gareth Priede, Trust Chibawara, Michael P. Busch, Gary Murphy, Reshma Kassanjee, Alex Welte, on behalf of the Consortium for the Evaluation and Performance of HIV Incidence Assays (CEPHIA)

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Performance comparison of the Maxim and Sedia Limiting Antigen Avidity assays for HIV incidence surveillance. Dahkki Joseph B Sempa, Alex Welte, Michael P Busch, Jake Hall, Dylan Hampton, Shelley N Facente, Sheila M Keating, Kara Marson, Neil Parkin, Christopher D Pilcher, Gary Murphy, Eduard Grebe, Consortium for the Evaluation and Performance of HIV Incidence Assays (CEPHIA)

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Semen amyloids participate in spermatozoa selection and clearance Dahkki Nadia R Roan, Nathallie Sandi-Monroy, Nargis Kohgadai, Shariq M Usmani, Katherine G Hamil, Jason Neidleman, Mauricio Montano, Ludger Ständker, Annika Röcker, Marielle Cavrois, Jared Rosen, Kara Marson, James F Smith, Christopher D Pilcher, Friedrich Gagsteiger, Olena Sakk, Michael O’Rand, Polina V Lishko, Frank Kirchhoff, Jan Münch, Warner C Greene

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Influence of HAART on alternative reading frame immune responses over the course of HIV-1 infection. Dahkki Stephane Champiat, Rui André Saraiva Raposo, Nicholas J Maness, John L Lehman, Sean E Purtell, Aaron M Hasenkrug, Jacob C Miller, Hansi Dean, Wayne C Koff, Marisa Ailin Hong, Jeffrey N Martin, Steven G Deeks, Gerald E Spotts, Christopher D Pilcher, Fredrick M Hecht, Esper G Kallas, Keith E Garrison, Douglas F Nixon

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Gut-Resident Lactobacillus Abundance Associates with IDO1 Inhibition and Th17 Dynamics in SIV-Infected Macaques Dahkki Ivan Vujkovic-Cvijin, Louise A. Swainson, Simon N. Chu, Alexandra M. Ortiz, Clark A. Santee, Annalise Petriello, Richard M. Dunham, Douglas W. Fadrosh, Din L. Lin, Ali A. Faruqi, Yong Huang, Cristian Apetrei, Ivona Pandrea, Frederick M. Hecht, Christopher D. Pilcher, Nichole R. Klatt, Jason M. Brenchley, Susan V. Lynch, Joseph M. McCune

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TCF-1 regulates HIV-specific CD8+ T cell expansion capacity Dahkki Rachel L. Rutishauser, Christian Deo T. Deguit, Joseph Hiatt, Franziska Blaeschke, Theodore L. Roth, Lynn Wang, Kyle A. Raymond, Carly E. Starke, Joseph C. Mudd, Wenxuan Chen, Carolyn Smullin, Rodrigo Matus-Nicodemos, Rebecca Hoh, Melissa Krone, Frederick M. Hecht, Christopher D. Pilcher, Jeffrey N. Martin, Richard A. Koup, Daniel C. Douek, Jason M. Brenchley, Rafick-Pierre Sékaly, Satish K. Pillai, Alexander Marson, Steven G. Deeks, Joseph M. McCune, Peter W. Hunt

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