Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection. by Christopher J R Illingworth, Ville Mustonen

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A novel framework for inferring parameters of transmission from viral sequence data. by Casper K Lumby, Nuno R Nene, Christopher J R Illingworth

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The airborne transmission of viruses causes tight transmission bottlenecks by Patrick Sinclair, Lei Zhao, Clive B. Beggs, Christopher J. R. Illingworth

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Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses. by Christopher J R Illingworth, Leopold Parts, Anders Bergström, Gianni Liti, Ville Mustonen

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Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites by Adam J Reid, Arthur M Talman, Hayley M Bennett, Ana R Gomes, Mandy J Sanders, Christopher J R Illingworth, Oliver Billker, Matthew Berriman, Mara KN Lawniczak

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Transmission of B.1.617.2 Delta variant between vaccinated healthcare workers by Steven A. Kemp, Mark T. K. Cheng, William L. Hamilton, Kimia Kamelian, The Indian SARS-CoV-2 Genomics Consortium (INSACOG), Sujit Singh, Partha Rakshit, Anurag Agrawal, Christopher J. R. Illingworth, Ravindra K. Gupta

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The effective rate of influenza reassortment is limited during human infection. by Ashley Sobel Leonard, Micah T McClain, Gavin J D Smith, David E Wentworth, Rebecca A Halpin, Xudong Lin, Amy Ransier, Timothy B Stockwell, Suman R Das, Anthony S Gilbert, Rob Lambkin-Williams, Geoffrey S Ginsburg, Christopher W Woods, Katia Koelle, Christopher J R Illingworth

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