Pan-genomic analysis of clonal bacterial samples using nanopore reads and genome graphs by Colquhoun, R

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK by Du Plessis, L, McCrone, J, Zarebski, A, Hill, V, Ruis, C, Gutierrez, B, Raghwani, J, Asworth, J, Colquhoun, R, Connor, T, Faria, N, Jackson, B, Loman, N, O'Toole, Á, Nicholls, S, Parag, K, Scher, E, Vasylyeva, T, Volz, E, Watts, A, Bogoch, I, Khan, K, Aanensen, D, Kraemer, M, Rambaut, A, Pybus, O

Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence by Kraemer, MUG, Hill, V, Ruis, C, Dellicour, S, Bajaj, S, McCrone, JT, Baele, G, Parag, KV, Lindstroem Battle, A, Guttierrez, B, Jackson, B, Colquhoun, R, O'Toole, A, Klein, B, Vespignani, A, CoG-UK consortium, Volz, E, Faria, NR, Aanensen, D, Loman, NJ, Du Plessis, L, Cauchemez, S, Rambaut, A, Scarpino, SV, Pybus, O