Evaluation of methods for detecting human reads in microbial sequencing datasets by Bush, S, Connor, TR, Peto, TEA, Crook, D, Walker, AS

Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic by Attwood, SW, Hill, SC, Aanensen, DM, Connor, TR, Pybus, OG

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package by Griffiths, EJ, Timme, RE, Mendes, CI, Page, AJ, Alikhan, N, Fornika, D, Maguire, F, Campos, J, Park, D, Olawoye, IB, Oluniyi, PE, Anderson, D, Christoffels, A, da Silva, AG, Cameron, R, Dooley, D, Katz, LS, Black, A, Karsch-Mizrachi, I, Barrett, T, Johnston, A, Connor, TR, Nicholls, SM, Witney, AA, Aanensen, DM

SARS-CoV-2 within-host diversity and transmission by Lythgoe, KA, Hall, M, Ferretti, L, de Cesare, M, MacIntyre-Cockett, G, Trebes, A, Andersson, M, Otecko, N, Wise, EL, Moore, N, Lynch, J, Kidd, S, Cortes, N, Mori, M, Williams, R, Vernet, G, Justice, A, Green, A, Nicholls, SM, Ansari, MA, Abeler-Dörner, L, Moore, CE, Peto, TEA, Eyre, DW, Shaw, R, Simmonds, P, Buck, D, Todd, JA, Connor, TR, Ashraf, S, da Silva Filipe, A, Shepherd, J, Thomson, EC, Bonsall, D, Fraser, C, Golubchik, T

SARS-CoV-2 within-host diversity and transmission by Lythgoe, KA, Hall, M, Ferretti, L, de Cesare, M, MacIntyre-Cockett, G, Trebes, A, Andersson, M, Otecko, N, Wise, EL, Moore, N, Lynch, J, Kidd, S, Cortes, N, Mori, M, Williams, R, Vernet, G, Justice, A, Green, A, Nicholls, SM, Ansari, MA, Abeler-Dörner, L, Moore, CE, Peto, TEA, Eyre, DW, Shaw, R, Simmonds, P, Buck, D, Todd, JA, Oxford Virus Sequencing Analysis Group (OVSG), Connor, TR, Ashraf, S, da Silva Filipe, A, Shepherd, J, Thomson, EC, COVID-19 Genomics UK (COG-UK) Consortium, Bonsall, D, Fraser, C, Golubchik, T