Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting by Mai, TT, Turner, P, Corander, J

PANINI: Pangenome Neighbour Identification for bacterial populations by Abudahab, K, Prada, J, Yang, Z, Bentley, S, Croucher, N, Corander, J, Aanensen, D

Two-phase importance sampling for inference about transmission trees. by Numminen, E, Chewapreecha, C, Sirén, J, Turner, C, Turner, P, Bentley, S, Corander, J

Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae by Mallawaarachchi, S, Tonkin-Hill, G, Croucher, NJ, Turner, P, Speed, D, Corander, J, Balding, D

Frequency-dependent selection in vaccine-associated pneumococcal population dynamics by Corander, J, Fraser, C, Gutmann, MU, Arnold, B, Hanage, WP, Bentley, SD, Lipsitch, M, Croucher, NJ

Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex by Chiner-Oms, A, Sanchez-Buso, L, Corander, J, Gagneux, S, Harris, SR, Young, D, González-Candelas, F, Comas, I

Diversification of colonization factors in a multidrug-resistant escherichia coli lineage evolving under negative frequency-dependent selection by McNally, A, Kallonen, T, Connor, C, Abudahab, K, Aanensen, D, Horner, C, Peacock, S, Parkhill, J, Croucher, N, Corander, J

The highly diverse plasmid population found in Escherichia coli colonizing travellers to Laos and its role in antimicrobial resistance gene carriage by Snaith, AE, Dunn, SJ, Moran, RA, Newton, PN, Dance, DAB, Davong, V, Kuenzli, E, Kantele, A, Corander, J, McNally, A

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis by Skwark, M, Croucher, N, Puranen, S, Chewapreecha, C, Pesonen, M, Xu, Y, Turner, P, Harris, S, Beres, S, Musser, J, Parkhill, J, Bentley, S, Aurell, E, Corander, J

Detecting co-selection through excess linkage disequilibrium in bacterial genomes by Mallawaarachchi, S, Tonkin-Hill, G, Pöntinen, A, Calland, J, Gladstone, R, Arredondo-Alonso, S, MacAlasdair, N, Thorpe, H, Top, J, Sheppard, S, Balding, D, Croucher, N, Corander, J

Dynamics of intestinal multidrug-resistant bacteria colonisation contracted by visitors to a high-endemic setting: a prospective, daily, real-time sampling study by Kantele, A, Kuenzli, E, Dunn, SJ, Dance, DAB, Newton, PN, Davong, V, Mero, S, Pakkanen, SH, Neumayr, A, Hatz, C, Snaith, A, Kallonen, T, Corander, J, McNally, A

Genomic tailoring of autogenous poultry vaccines to reduce Campylobacter from farm to fork by Calland, JK, Pesonen, ME, Mehat, J, Pascoe, B, Haydon, DJ, Lourenco, J, Lukasiewicz, B, Mourkas, E, Hitchings, MD, La Ragione, RM, Hammond, P, Wallis, TS, Corander, J, Sheppard, SK

Pneumococcal within-host diversity during colonization, transmission and treatment by Tonkin-Hill, G, Ling, C, Chaguza, C, Salter, SJ, Hinfonthong, P, Nikolaou, E, Tate, N, Pastusiak, A, Turner, C, Chewapreecha, C, Frost, SDW, Corander, J, Croucher, NJ, Turner, P, Bentley, SD

Co-evolutionary signals identify Burkholderia pseudomallei survival strategies in a hostile environment by Chewapreecha, C, Pensar, J, Chattagul, S, Pesonen, M, Sangphukieo, A, Boonklang, P, Potisap, C, Koosakulnirand, S, Feil, EJ, Dunachie, S, Chantratita, N, Limmathurotsakul, D, Peacock, SJ, Day, NPJ, Parkhill, J, Thomson, NR, Sermswan, RW, Corander, J

Dense genomic sampling identifies highways of pneumococcal recombination. by Chewapreecha, C, Harris, SR, Croucher, N, Turner, C, Marttinen, P, Cheng, L, Pessia, A, Aanensen, D, Mather, A, Page, A, Salter, S, Harris, D, Nosten, F, Goldblatt, D, Corander, J, Parkhill, J, Turner, P, Bentley, S

Recombination-mediated host-adaptation by avian Staphylococcus aureus by Murray, S, Pascoe, B, Méric, G, Mageiros, L, Yahara, K, Hitchings, M, Friedmann, Y, Wilkinson, T, Gormley, F, Mack, D, Bray, J, Lamble, S, Bowden, R, Jolley, K, Maiden, M, Wendlandt, S, Schwarz, S, Corander, J, Fitzgerald, J, Sheppard, S

Genome evolution and the emergence of pathogenicity in avian Escherichia coli by Mageiros, L, Meric, G, Bayliss, S, Pensar, J, Pascoe, B, Mourkas, E, Calland, J, Yahara, K, Murray, S, Wilkinson, T, Wiliams, L, Hitchings, M, Porter, J, Kemmett, K, Feil, E, Jolley, K, Williams, N, Corander, J, Sheppard, S

Dense genomic sampling identifies highways of pneumococcal recombination by Chewapreecha, C, Harris, SR, Croucher, N, Turner, C, Marttinen, P, Cheng, L, Pessia, A, Aanensen, D, Mather, A, Page, A, Salter, S, Harris, D, Nosten, F, Goldblatt, D, Corander, J, Parkhill, J, Turner, P, Bentley, S

Genome-wide epistasis and co-selection study using mutual information by Pensar, J, Puranen, S, Arnold, B, MacAlasdair, N, Kuronen, J, Tonkin-Hill, G, Pesonen, M, Xu, Y, Sipola, A, Sanchez-Buso, L, Lees, JA, Chewapreecha, C, Bentley, SD, Harris, SR, Parkhill, J, Croucher, NJ, Corander, J

BurkHostGEN: a study protocol for evaluating variations in the Burkholderia pseudomallei and host genomes associated with melioidosis infection by Angchagun, K, Boonklang, P, Chomkatekaew, C, Pakdeerat, S, Wongsuwan, G, Amornchai, P, Wuthiekanun, V, Panapipat, S, Ngernseng, T, Waithira, N, Walton, S, Limmathurotsakul, D, Surawong, A, Siriboon, S, Chamnan, P, Chantratita, N, Dunachie, S, Corander, J, Davenport, E, Knight, J, Parkhill, J, Peacock, S, Thomson, N, Day, NPJ, Chewapreecha, C