Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting Bằng Mai, TT, Turner, P, Corander, J

PANINI: Pangenome Neighbour Identification for bacterial populations Bằng Abudahab, K, Prada, J, Yang, Z, Bentley, S, Croucher, N, Corander, J, Aanensen, D

Two-phase importance sampling for inference about transmission trees. Bằng Numminen, E, Chewapreecha, C, Sirén, J, Turner, C, Turner, P, Bentley, S, Corander, J

Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae Bằng Mallawaarachchi, S, Tonkin-Hill, G, Croucher, NJ, Turner, P, Speed, D, Corander, J, Balding, D

Frequency-dependent selection in vaccine-associated pneumococcal population dynamics Bằng Corander, J, Fraser, C, Gutmann, MU, Arnold, B, Hanage, WP, Bentley, SD, Lipsitch, M, Croucher, NJ

Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex Bằng Chiner-Oms, A, Sanchez-Buso, L, Corander, J, Gagneux, S, Harris, SR, Young, D, González-Candelas, F, Comas, I

Diversification of colonization factors in a multidrug-resistant escherichia coli lineage evolving under negative frequency-dependent selection Bằng McNally, A, Kallonen, T, Connor, C, Abudahab, K, Aanensen, D, Horner, C, Peacock, S, Parkhill, J, Croucher, N, Corander, J

The highly diverse plasmid population found in Escherichia coli colonizing travellers to Laos and its role in antimicrobial resistance gene carriage Bằng Snaith, AE, Dunn, SJ, Moran, RA, Newton, PN, Dance, DAB, Davong, V, Kuenzli, E, Kantele, A, Corander, J, McNally, A

Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis Bằng Skwark, M, Croucher, N, Puranen, S, Chewapreecha, C, Pesonen, M, Xu, Y, Turner, P, Harris, S, Beres, S, Musser, J, Parkhill, J, Bentley, S, Aurell, E, Corander, J

Detecting co-selection through excess linkage disequilibrium in bacterial genomes Bằng Mallawaarachchi, S, Tonkin-Hill, G, Pöntinen, A, Calland, J, Gladstone, R, Arredondo-Alonso, S, MacAlasdair, N, Thorpe, H, Top, J, Sheppard, S, Balding, D, Croucher, N, Corander, J

Dynamics of intestinal multidrug-resistant bacteria colonisation contracted by visitors to a high-endemic setting: a prospective, daily, real-time sampling study Bằng Kantele, A, Kuenzli, E, Dunn, SJ, Dance, DAB, Newton, PN, Davong, V, Mero, S, Pakkanen, SH, Neumayr, A, Hatz, C, Snaith, A, Kallonen, T, Corander, J, McNally, A

Genomic tailoring of autogenous poultry vaccines to reduce Campylobacter from farm to fork Bằng Calland, JK, Pesonen, ME, Mehat, J, Pascoe, B, Haydon, DJ, Lourenco, J, Lukasiewicz, B, Mourkas, E, Hitchings, MD, La Ragione, RM, Hammond, P, Wallis, TS, Corander, J, Sheppard, SK

Pneumococcal within-host diversity during colonization, transmission and treatment Bằng Tonkin-Hill, G, Ling, C, Chaguza, C, Salter, SJ, Hinfonthong, P, Nikolaou, E, Tate, N, Pastusiak, A, Turner, C, Chewapreecha, C, Frost, SDW, Corander, J, Croucher, NJ, Turner, P, Bentley, SD

Co-evolutionary signals identify Burkholderia pseudomallei survival strategies in a hostile environment Bằng Chewapreecha, C, Pensar, J, Chattagul, S, Pesonen, M, Sangphukieo, A, Boonklang, P, Potisap, C, Koosakulnirand, S, Feil, EJ, Dunachie, S, Chantratita, N, Limmathurotsakul, D, Peacock, SJ, Day, NPJ, Parkhill, J, Thomson, NR, Sermswan, RW, Corander, J

Dense genomic sampling identifies highways of pneumococcal recombination. Bằng Chewapreecha, C, Harris, SR, Croucher, N, Turner, C, Marttinen, P, Cheng, L, Pessia, A, Aanensen, D, Mather, A, Page, A, Salter, S, Harris, D, Nosten, F, Goldblatt, D, Corander, J, Parkhill, J, Turner, P, Bentley, S

Recombination-mediated host-adaptation by avian Staphylococcus aureus Bằng Murray, S, Pascoe, B, Méric, G, Mageiros, L, Yahara, K, Hitchings, M, Friedmann, Y, Wilkinson, T, Gormley, F, Mack, D, Bray, J, Lamble, S, Bowden, R, Jolley, K, Maiden, M, Wendlandt, S, Schwarz, S, Corander, J, Fitzgerald, J, Sheppard, S

Genome evolution and the emergence of pathogenicity in avian Escherichia coli Bằng Mageiros, L, Meric, G, Bayliss, S, Pensar, J, Pascoe, B, Mourkas, E, Calland, J, Yahara, K, Murray, S, Wilkinson, T, Wiliams, L, Hitchings, M, Porter, J, Kemmett, K, Feil, E, Jolley, K, Williams, N, Corander, J, Sheppard, S

Dense genomic sampling identifies highways of pneumococcal recombination Bằng Chewapreecha, C, Harris, SR, Croucher, N, Turner, C, Marttinen, P, Cheng, L, Pessia, A, Aanensen, D, Mather, A, Page, A, Salter, S, Harris, D, Nosten, F, Goldblatt, D, Corander, J, Parkhill, J, Turner, P, Bentley, S

Genome-wide epistasis and co-selection study using mutual information Bằng Pensar, J, Puranen, S, Arnold, B, MacAlasdair, N, Kuronen, J, Tonkin-Hill, G, Pesonen, M, Xu, Y, Sipola, A, Sanchez-Buso, L, Lees, JA, Chewapreecha, C, Bentley, SD, Harris, SR, Parkhill, J, Croucher, NJ, Corander, J

BurkHostGEN: a study protocol for evaluating variations in the Burkholderia pseudomallei and host genomes associated with melioidosis infection Bằng Angchagun, K, Boonklang, P, Chomkatekaew, C, Pakdeerat, S, Wongsuwan, G, Amornchai, P, Wuthiekanun, V, Panapipat, S, Ngernseng, T, Waithira, N, Walton, S, Limmathurotsakul, D, Surawong, A, Siriboon, S, Chamnan, P, Chantratita, N, Dunachie, S, Corander, J, Davenport, E, Knight, J, Parkhill, J, Peacock, S, Thomson, N, Day, NPJ, Chewapreecha, C