Analyses of the Root-Knot Nematode (<i>Meloidogyne graminicola</i>) Transcriptome during Host Infection Highlight Specific Gene Expression Profiling in Resistant Rice Plants by Anne-Sophie Petitot, Alexis Dereeper, Corinne Da Silva, Julie Guy, Diana Fernandez

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De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes. by Hélène Hinaux, Julie Poulain, Corinne Da Silva, Céline Noirot, William R Jeffery, Didier Casane, Sylvie Rétaux

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Neurodevelopment genes in lampreys reveal trends for forebrain evolution in craniates. by Adèle Guérin, Yves d'Aubenton-Carafa, Emna Marrakchi, Corinne Da Silva, Patrick Wincker, Sylvie Mazan, Sylvie Rétaux

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Are Hox genes ancestrally involved in axial patterning? Evidence from the hydrozoan Clytia hemisphaerica (Cnidaria). by Roxane Chiori, Muriel Jager, Elsa Denker, Patrick Wincker, Corinne Da Silva, Hervé Le Guyader, Michaël Manuel, Eric Quéinnec

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Against All Odds: Trehalose-6-Phosphate Synthase and Trehalase Genes in the Bdelloid Rotifer Adineta vaga Were Acquired by Horizontal Gene Transfer and Are Upregulated during Desic... by Boris Hespeels, Xiang Li, Jean-François Flot, Lise-Marie Pigneur, Jeremy Malaisse, Corinne Da Silva, Karine Van Doninck

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RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter. by Benjamin Petre, Emmanuelle Morin, Emilie Tisserant, Stéphane Hacquard, Corinne Da Silva, Julie Poulain, Christine Delaruelle, Francis Martin, Nicolas Rouhier, Annegret Kohler, Sébastien Duplessis

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Oak stands along an elevation gradient have different molecular strategies for regulating bud phenology by Gregoire Le Provost, Céline Lalanne, Isabelle Lesur, Jean-Marc Louvet, Sylvain Delzon, Antoine Kremer, Karine Labadie, Jean-Marc Aury, Corinne Da Silva, Thomas Moritz, Christophe Plomion

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A de novo approach to disentangle partner identity and function in holobiont systems by Arnaud Meng, Camille Marchet, Erwan Corre, Pierre Peterlongo, Adriana Alberti, Corinne Da Silva, Patrick Wincker, Eric Pelletier, Ian Probert, Johan Decelle, Stéphane Le Crom, Fabrice Not, Lucie Bittner

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Masculinization of the x chromosome in the pea aphid. by Julie Jaquiéry, Claude Rispe, Denis Roze, Fabrice Legeai, Gaël Le Trionnaire, Solenn Stoeckel, Lucie Mieuzet, Corinne Da Silva, Julie Poulain, Nathalie Prunier-Leterme, Béatrice Ségurens, Denis Tagu, Jean-Christophe Simon

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Comparative Time-Scale Gene Expression Analysis Highlights the Infection Processes of Two Amoebophrya Strains by Sarah Farhat, Isabelle Florent, Benjamin Noel, Ehsan Kayal, Corinne Da Silva, Estelle Bigeard, Adriana Alberti, Karine Labadie, Erwan Corre, Jean-Marc Aury, Stephane Rombauts, Patrick Wincker, Laure Guillou, Betina M. Porcel

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Mechanisms of endoderm formation in a cartilaginous fish reveal ancestral and homoplastic traits in jawed vertebrates by Benoit G. Godard, Marion Coolen, Sophie Le Panse, Aurélie Gombault, Susana Ferreiro-Galve, Laurent Laguerre, Ronan Lagadec, Patrick Wincker, Julie Poulain, Corinne Da Silva, Shigehiro Kuraku, Wilfrid Carre, Agnès Boutet, Sylvie Mazan

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Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant by Elise J. Gay, Jessica L. Soyer, Nicolas Lapalu, Juliette Linglin, Isabelle Fudal, Corinne Da Silva, Patrick Wincker, Jean-Marc Aury, Corinne Cruaud, Anne Levrel, Jocelyne Lemoine, Regine Delourme, Thierry Rouxel, Marie-Hélène Balesdent

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Identification of novel target genes for safer and more specific control of root-knot nematodes from a pan-genome mining. by Etienne G J Danchin, Marie-Jeanne Arguel, Amandine Campan-Fournier, Laetitia Perfus-Barbeoch, Marc Magliano, Marie-Noëlle Rosso, Martine Da Rocha, Corinne Da Silva, Nicolas Nottet, Karine Labadie, Julie Guy, François Artiguenave, Pierre Abad

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Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells. by Christo Kole, Naomi Berdugo, Corinne Da Silva, Najate Aït-Ali, Géraldine Millet-Puel, Delphine Pagan, Frédéric Blond, Laetitia Poidevin, Raymond Ripp, Valérie Fontaine, Patrick Wincker, Donald J Zack, José-Alain Sahel, Olivier Poch, Thierry Léveillard

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Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes. by Romain Blanc-Mathieu, Laetitia Perfus-Barbeoch, Jean-Marc Aury, Martine Da Rocha, Jérôme Gouzy, Erika Sallet, Cristina Martin-Jimenez, Marc Bailly-Bechet, Philippe Castagnone-Sereno, Jean-François Flot, Djampa K Kozlowski, Julie Cazareth, Arnaud Couloux, Corinne Da Silva, Julie Guy, Yu-Jin Kim-Jo, Corinne Rancurel, Thomas Schiex, Pierre Abad, Patrick Wincker, Etienne G J Danchin

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Author Correction to: Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp by Sarah Farhat, Phuong Le, Ehsan Kayal, Benjamin Noel, Estelle Bigeard, Erwan Corre, Florian Maumus, Isabelle Florent, Adriana Alberti, Jean-Marc Aury, Tristan Barbeyron, Ruibo Cai, Corinne Da Silva, Benjamin Istace, Karine Labadie, Dominique Marie, Jonathan Mercier, Tsinda Rukwavu, Jeremy Szymczak, Thierry Tonon, Catharina Alves-de-Souza, Pierre Rouzé, Yves Van de Peer, Patrick Wincker, Stephane Rombauts, Betina M. Porcel, Laure Guillou

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Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp by Sarah Farhat, Phuong Le, Ehsan Kayal, Benjamin Noel, Estelle Bigeard, Erwan Corre, Florian Maumus, Isabelle Florent, Adriana Alberti, Jean-Marc Aury, Tristan Barbeyron, Ruibo Cai, Corinne Da Silva, Benjamin Istace, Karine Labadie, Dominique Marie, Jonathan Mercier, Tsinda Rukwavu, Jeremy Szymczak, Thierry Tonon, Catharina Alves-de-Souza, Pierre Rouzé, Yves Van de Peer, Patrick Wincker, Stephane Rombauts, Betina M. Porcel, Laure Guillou

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The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants. by Betina M Porcel, France Denoeud, Fred Opperdoes, Benjamin Noel, Mohammed-Amine Madoui, Tansy C Hammarton, Mark C Field, Corinne Da Silva, Arnaud Couloux, Julie Poulain, Michael Katinka, Kamel Jabbari, Jean-Marc Aury, David A Campbell, Roxana Cintron, Nicholas J Dickens, Roberto Docampo, Nancy R Sturm, V Lila Koumandou, Sandrine Fabre, Pavel Flegontov, Julius Lukeš, Shulamit Michaeli, Jeremy C Mottram, Balázs Szöőr, Dan Zilberstein, Frédéric Bringaud, Patrick Wincker, Michel Dollet

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A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs by Bagdevi Mishra, Bagdevi Mishra, Bartosz Ulaszewski, Joanna Meger, Jean-Marc Aury, Catherine Bodénès, Isabelle Lesur-Kupin, Isabelle Lesur-Kupin, Isabelle Lesur-Kupin, Markus Pfenninger, Corinne Da Silva, Deepak K Gupta, Deepak K Gupta, Deepak K Gupta, Erwan Guichoux, Katrin Heer, Katrin Heer, Céline Lalanne, Karine Labadie, Lars Opgenoorth, Sebastian Ploch, Grégoire Le Provost, Jérôme Salse, Ivan Scotti, Stefan Wötzel, Stefan Wötzel, Christophe Plomion, Jaroslaw Burczyk, Marco Thines, Marco Thines, Marco Thines

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A global ocean atlas of eukaryotic genes by Quentin Carradec, Eric Pelletier, Corinne Da Silva, Adriana Alberti, Yoann Seeleuthner, Romain Blanc-Mathieu, Gipsi Lima-Mendez, Fabio Rocha, Leila Tirichine, Karine Labadie, Amos Kirilovsky, Alexis Bertrand, Stefan Engelen, Mohammed-Amin Madoui, Raphaël Méheust, Julie Poulain, Sarah Romac, Daniel J. Richter, Genki Yoshikawa, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, Tara Oceans Coordinators, Olivier Jaillon, Jean-Marc Aury, Eric Karsenti, Matthew B. Sullivan, Shinichi Sunagawa, Peer Bork, Fabrice Not, Pascal Hingamp, Jeroen Raes, Lionel Guidi, Hiroyuki Ogata, Colomban de Vargas, Daniele Iudicone, Chris Bowler, Patrick Wincker

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