Hash-based core genome multilocus sequencing typing for Clostridium difficile by Eyre, DW, Peto, TEA, Crook, DW, Walker, AS, Wilcox, MH

Within-host evolution of bacterial pathogens by Didelot, X, Walker, AS, Peto, TE, Crook, DW, Wilson, DJ

The implementation of whole-genome sequencing for Mycobacterium tuberculosis in Vietnam by Huong, DT, Walker, TM, Ha, DT, Crook, DW, Thwaites, GE, Thuong, NTT

Dynamic linkage of COVID-19 test results between Public Health England’s Second Generation Surveillance System and UK Biobank Open Access by Armstrong, J, Rudkin, JK, Wilson, DJ, Allen, N, Crook, DW, Wyllie, DH, O'Connell, AM

Re-emergence of methicillin susceptibility in a resistant lineage of Staphylococcus aureus. by Ledda, A, Price, JR, Cole, K, Llewelyn, MJ, Kearns, AM, Crook, DW, Paul, J, Didelot, X

A quantitative evaluation of MIRU-VNTR typing against whole-genome sequencing for identifying Mycobacterium tuberculosis transmission: a prospective observational cohort study by Wyllie, DH, Davidson, JA, Smith, E, Rathod, P, Crook, DW, Peto, TEA, Robinson, E, Walker, T, Campbell, C

Genomic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients by Constantinides, B, Chau, KK, Quan, TP, Rodger, G, Lipworth, S, Crook, DW, Peto, TEA, Walker, AS, Stoesser, N, Et al.

High-resolution characterization of short-term temporal variability in the taxonomic and resistome composition of wastewater influent by Chau, KK, Goodall, T, Bowes, M, Easterbrook, K, Brett, H, Hughes, J, Crook, DW, Read, DS, Walker, AS, Stoesser, N

Complete sequencing of plasmids containing blaOXA-163 and blaOXA-48 in Escherichia coli sequence type 131. by Stoesser, N, Sheppard, AE, Peirano, G, Sebra, R, Lynch, T, Anson, L, Kasarskis, A, Motyl, MR, Crook, DW, Pitout, JD

Risk factors associated with carbapenemase-producing enterobacterales (CPE) positivity in the hospital wastewater environment by Park, SC, Parikh, H, Vegesana, K, Stoesser, N, Barry, KE, Kotay, SM, Dudley, S, Peto, TEA, Crook, DW, Walker, AS, Mathers, AJ

Genomic dynamics of species and mobile genetic elements in a prolonged blaIMP-4-associated carbapenemase outbreak in an Australian hospital by Kizny Gordon, A, Phan, HTT, Lipworth, SI, Cheong, E, Gottlieb, T, George, S, Peto, TEA, Mathers, AJ, Walker, AS, Crook, DW, Stoesser, N

Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104 by Leekitcharoenphon, P, Hendriksen, RS, Le Hello, S, Weill, FX, Baggesen, DL, Jun, SR, Ussery, DW, Lund, O, Crook, DW, Wilson, DJ, Aarestrup, FM

DNA thermo-protection facilitates whole genome sequencing of Mycobacteria direct from clinical samples by George, S, Xu, Y, Rodger, G, Morgan, M, Sanderson, N, Hoosdally, SJ, Thulborn, S, Robinson, E, Rathod, P, Walker, AS, Peto, TEA, Crook, DW, Dingle, K

Penicillin binding protein substitutions co-occur with fluoroquinolone resistance in ‘epidemic’ lineages of multi drug-resistant Clostridioides difficile by Dingle, K, Freeman, J, Didelot, X, Quan, TP, Eyre, DW, Swann, J, Spittal, WD, Clark, EV, Jolley, KA, Walker, AS, Wilcox, MH, Crook, DW

Extensive within-host diversity in fecally carried extended-spectrum-beta-lactamase-producing Escherichia coli isolates: implications for transmission analyses by Stoesser, N, Sheppard, AE, Moore, CE, Golubchik, T, Parry, CM, Nget, P, Saroeun, M, Day, NPJ, Giess, A, Johnson, JR, Peto, TEA, Crook, DW, Walker, AS

Time of day of vaccination affects SARS-CoV-2 antibody responses in an observational study of health care workers by Wang, W, Balfe, P, Eyre, DW, Lumley, SF, O'Donnell, D, Warren, F, Crook, DW, Jeffery, K, Matthews, PC, Klerman, EB, McKeating, JA

Validating a 14-drug microtitre plate containing bedaquiline and delamanid for large-scale research susceptibility testing of Mycobacterium tuberculosis by Rancoita, PMV, Cugnata, F, Cruz, AL, Borroni, E, Hoosdally, SJ, Walker, TM, Grazian, C, Davies, TJ, Peto, TEA, Crook, DW, Fowler, PW, Cirillo, DM

Developing a framework for tracking antimicrobial resistance gene movement in a persistent environmental reservoir by Mathers, AJ, Li, TJX, He, Q, Narendra, S, Stoesser, N, Eyre, DW, Walker, AS, Barry, KE, Castañeda-Barba, S, Huang, FW, Parikh, H, Kotay, S, Crook, DW, Reidys, C

A longitudinal study reveals persistence of antimicrobial resistance on livestock farms is not due to antimicrobial usage alone by Smith, RP, May, HE, AbuOun, M, Stubberfield, E, Gilson, D, Chau, KK, Crook, DW, Shaw, LP, Read, DS, Stoesser, N, Vilar, MJ, Anjum, MF

Developing a framework for tracking antimicrobial resistance gene movement in a persistent environmental reservoir by Mathers, AJ, Li, TJX, He, Q, Narendra, S, Stoesser, N, Eyre, DW, Walker, AS, Barry, KE, Castañeda-Barba, S, Huang, FW, Parikh, H, Kotay, S, Crook, DW, Reidys, C