Towards Translational Epidemiology: Next-Generation Sequencing and Phylogeography as Epidemiological Mainstays by Crystal M. Hepp

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Species distribution modeling of Aedes aegypti in Maricopa County, Arizona from 2014 to 2020 by Whitney M. Holeva-Eklund, Whitney M. Holeva-Eklund, Steven J. Young, James Will, Nicole Busser, John Townsend, Crystal M. Hepp, Crystal M. Hepp, Crystal M. Hepp

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Contrasted patterns of evolution of the LINE-1 retrotransposon in perissodactyls: the history of a LINE-1 extinction by Akash Sookdeo, Crystal M. Hepp, Stéphane Boissinot

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Sample pooling methods for efficient pathogen screening: Practical implications. by Tara N Furstenau, Jill H Cocking, Crystal M Hepp, Viacheslav Y Fofanov

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Identifying genetic relationships among tarsier populations in the islands of Bunaken National Park and mainland Sulawesi. by Thalita Christiani Pingkan Sumampow, Myron Shekelle, Paul Beier, Faith M Walker, Crystal M Hepp

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Biting midges (Diptera: Ceratopogonidae) as putative vectors of zoonotic Onchocerca lupi (Nematoda: Onchocercidae) in northern Arizona and New Mexico, southwestern United States by Chandler C. Roe, Chandler C. Roe, Olivia Holiday, Kelly Upshaw-Bia, Gaven Benally, Charles H. D. Williamson, Jennifer Urbanz, Guilherme G. Verocai, Chase L. Ridenour, Chase L. Ridenour, Chase L. Ridenour, Roxanne Nottingham, Morgan A. Ford, Derek P. Lake, Theodore A. Kennedy, Crystal M. Hepp, Crystal M. Hepp, Crystal M. Hepp, Jason W. Sahl

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Complete mitochondrial genome of Onchocerca lupi (Nematoda, Onchocercidae) by Chandler C. Roe, Jennifer Urbanz, Lela Andrews, Guilherme G. Verocai, David M. Engelthaler, Crystal M. Hepp, Jason W. Sahl

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Characterization of neonatal opioid withdrawal syndrome in Arizona from 2010-2017. by Emery R Eaves, Jarrett Barber, Ryann Whealy, Sara A Clancey, Rita Wright, Jill Hager Cocking, Joseph Spadafino, Crystal M Hepp

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Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague. by Amy J Vogler, Voahangy Andrianaivoarimanana, Sandra Telfer, Carina M Hall, Jason W Sahl, Crystal M Hepp, Heather Centner, Genevieve Andersen, Dawn N Birdsell, Lila Rahalison, Roxanne Nottingham, Paul Keim, David M Wagner, Minoarisoa Rajerison

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Lyssa excreta: Defining parameters for fecal samples as a rabies virus surveillance method by Faith M. Walker, Jordyn R. Upton, Daryn Erickson, Zachary A. Barrand, Breezy Brock, Michael Valentine, Emma L. Federman, Emma M. Froehlich, Lolita Van Pelt, Lias Hastings, Daniel E. Sanchez, David L. Bergman, David M. Engelthaler, Crystal M. Hepp

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Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events. by Holger C Scholz, Talima Pearson, Heidie Hornstra, Michaela Projahn, Rahime Terzioglu, Renate Wernery, Enrico Georgi, Julia M Riehm, David M Wagner, Paul S Keim, Marina Joseph, Bobby Johnson, Joerg Kinne, Shanti Jose, Crystal M Hepp, Angela Witte, Ulrich Wernery

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Dating the <named-content content-type="genus-species">Cryptococcus gattii</named-content> Dispersal to the North American Pacific Northwest by Chandler C. Roe, Jolene Bowers, Hanna Oltean, Emilio DeBess, Philippe J. Dufresne, Scott McBurney, David P. Overy, Bodo Wanke, Colleen Lysen, Tom Chiller, Wieland Meyer, George R. Thompson, Shawn R. Lockhart, Crystal M. Hepp, David M. Engelthaler

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One health genomic surveillance and response to a university-based outbreak of the SARS-CoV-2 Delta AY.25 lineage, Arizona, 2021 by Hayley D. Yaglom, Matthew Maurer, Brooke Collins, Jacob Hojnacki, Juan Monroy-Nieto, Jolene R. Bowers, Samuel Packard, Daryn E. Erickson, Zachary A. Barrand, Kyle M. Simmons, Breezy N. Brock, Efrem S. Lim, Sandra Smith, Crystal M. Hepp, David M. Engelthaler

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Local Population Structure and Patterns of Western Hemisphere Dispersal for <italic toggle="yes">Coccidioides</italic> spp., the Fungal Cause of Valley Fever by David M. Engelthaler, Chandler C. Roe, Crystal M. Hepp, Marcus Teixeira, Elizabeth M. Driebe, James M. Schupp, Lalitha Gade, Victor Waddell, Kenneth Komatsu, Eduardo Arathoon, Heidi Logemann, George R. Thompson, Tom Chiller, Bridget Barker, Paul Keim, Anastasia P. Litvintseva

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St. Louis Encephalitis Virus in the Southwestern United States: A Phylogeographic Case for a Multi-Variant Introduction Event by Chase L. Ridenour, Chase L. Ridenour, Jill Cocking, Jill Cocking, Samuel Poidmore, Daryn Erickson, Breezy Brock, Michael Valentine, Chandler C. Roe, Chandler C. Roe, Steven J. Young, Jennifer A. Henke, Kim Y. Hung, Jeremy Wittie, Elene Stefanakos, Chris Sumner, Martha Ruedas, Vivek Raman, Nicole Seaton, William Bendik, Heidie M. Hornstra O’Neill, Krystal Sheridan, Krystal Sheridan, Heather Centner, Darrin Lemmer, Viacheslav Fofanov, Viacheslav Fofanov, Kirk Smith, James Will, John Townsend, Jeffrey T. Foster, Paul S. Keim, Paul S. Keim, David M. Engelthaler, Crystal M. Hepp, Crystal M. Hepp

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Unique Genomic Epidemiology of COVID-19 in the White Mountain Apache Tribe, April to August 2020, Arizona by Jolene R. Bowers, Hayley D. Yaglom, Crystal M. Hepp, Ashlyn Pfeiffer, Daniel Jasso-Selles, Nicole Bratsch, J. T. Nashio, Megan Folkerts, Sara M. Wilbur, Chris French, Darrin Lemmer, Kathryn Fitzpatrick, Trung Huynh, Kenneth Komatsu, James B. McAuley, Ryan Close, David M. Engelthaler

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Phylogenetic analysis of West Nile Virus in Maricopa County, Arizona: Evidence for dynamic behavior of strains in two major lineages in the American Southwest. by Crystal M Hepp, Jill Hager Cocking, Michael Valentine, Steven J Young, Dan Damian, Kimberly E Samuels-Crow, Krystal Sheridan, Viacheslav Y Fofanov, Tara N Furstenau, Joseph D Busch, Daryn E Erickson, Ryan C Lancione, Kirk Smith, James Will, John Townsend, Paul S Keim, David M Engelthaler

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Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus. by Elizabeth M Driebe, Jason W Sahl, Chandler Roe, Jolene R Bowers, James M Schupp, John D Gillece, Erin Kelley, Lance B Price, Talima R Pearson, Crystal M Hepp, Pius M Brzoska, Craig A Cummings, Manohar R Furtado, Paal S Andersen, Marc Stegger, David M Engelthaler, Paul S Keim

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Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity [version 2; peer review: 2 approved] by Evan Bolyen, Matthew R. Dillon, Nicholas A. Bokulich, Jason T. Ladner, Brendan B. Larsen, Crystal M. Hepp, Darrin Lemmer, Jason W. Sahl, Andrew Sanchez, Chris Holdgraf, Chris Sewell, Aakash G. Choudhury, John Stachurski, Matthew McKay, Anthony Simard, David M. Engelthaler, Michael Worobey, Paul Keim, J. Gregory Caporaso

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Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection. by Talima Pearson, Jason W Sahl, Crystal M Hepp, Karthik Handady, Heidie Hornstra, Adam J Vazquez, Erik Settles, Mark Mayo, Mirjam Kaestli, Charles H D Williamson, Erin P Price, Derek S Sarovich, James M Cook, Spenser R Wolken, Richard A Bowen, Apichai Tuanyok, Jeffrey T Foster, Kevin P Drees, Timothy J Kidd, Scott C Bell, Bart J Currie, Paul Keim

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