PEACOCK: a machine learning approach to assess the validity of cell type-specific enhancer-gene regulatory relationships by Caitlin Mills, Crystal N. Marconett, Juan Pablo Lewinger, Huaiyu Mi

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Transcriptomic profiling of primary alveolar epithelial cell differentiation in human and rat by Crystal N. Marconett, Beiyun Zhou, Kimberly D. Siegmund, Zea Borok, Ite A. Laird-Offringa

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PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence. by Caitlin Mills, Anushya Muruganujan, Dustin Ebert, Crystal N Marconett, Juan Pablo Lewinger, Paul D Thomas, Huaiyu Mi

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TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma. by Daniel J Mullen, Chunli Yan, Diane S Kang, Beiyun Zhou, Zea Borok, Crystal N Marconett, Peggy J Farnham, Ite A Offringa, Suhn Kyong Rhie

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Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation. by Crystal N Marconett, Beiyun Zhou, Megan E Rieger, Suhaida A Selamat, Mickael Dubourd, Xiaohui Fang, Sean K Lynch, Theresa Ryan Stueve, Kimberly D Siegmund, Benjamin P Berman, Zea Borok, Ite A Laird-Offringa

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Integrated Single-Cell RNA-Sequencing Analysis of Aquaporin 5-Expressing Mouse Lung Epithelial Cells Identifies GPRC5A as a Novel Validated Type I Cell Surface Marker by Masafumi Horie, Alessandra Castaldi, Mitsuhiro Sunohara, Hongjun Wang, Yanbin Ji, Yixin Liu, Fan Li, Thomas A. Wilkinson, Long Hung, Hua Shen, Hidenori Kage, Ite A. Offringa, Crystal N. Marconett, Per Flodby, Beiyun Zhou, Zea Borok

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Alveolar type I cells can give rise to KRAS-induced lung adenocarcinoma by Minxiao Yang, Hua Shen, Per Flodby, Michael D. Koss, Rania Bassiouni, Yixin Liu, Tea Jashashvili, Aaron Neely, Ezuka Ogbolu, Jonathan Castillo, Theresa Ryan Stueve, Daniel J. Mullen, Amy L. Ryan, John Carpten, Alessandra Castaldi, W. Dean Wallace, Beiyun Zhou, Zea Borok, Crystal N. Marconett

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