A screen to identify drug resistant variants to target-directed anti-cancer agents by Azam Mohammad, Raz Tal, Nardi Valentina, Opitz Sarah L., Daley George Q.

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Broader Implications of Defining Standards for the Pluripotency of iPSCs by Daley, George Q., Lensch, M. William, Jaenisch, Rudolf, Meissner, Alexander, Plath, Kathrin, Yamanaka, Shinya

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Euchromatin islands in large heterochromatin domains are enriched for CTCF binding and differentially DNA-methylated regions by Wen Bo, Wu Hao, Loh Yuin-Han, Briem Eirikur, Daley George Q, Feinberg Andrew P

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Dynamic instability of genomic methylation patterns in pluripotent stem cells by Ooi Steen KT, Wolf Daniel, Hartung Odelya, Agarwal Suneet, Daley George Q, Goff Stephen P, Bestor Timothy H

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Comprehensive Mapping of Pluripotent Stem Cell Metabolism Using Dynamic Genome-Scale Network Modeling by Chandrasekaran, Sriram, Zhang, Jin, Sun, Zhen, Zhang, Li, Ross, Christian A., Huang, Yu-Chung, Asara, John M., Li, Hu, Daley, George Q., Collins, James J.

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The Epithelial-Mesenchymal Transition Factor SNAIL Paradoxically Enhances Reprogramming by Unternaehrer, Juli J., Zhao, Rui, Kim, Kitai, Cesana, Marcella, Powers, John T., Ratanasirintrawoot, Sutheera, Onder, Tamer T., Shibue, Tsukasa, Weinberg, Robert A., Daley, George Q., Weinberg, Robert A

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Reconstruction of complex single-cell trajectories using CellRouter by Lummertz da Rocha, Edroaldo, Rowe, R. Grant, Lundin, Vanessa, Malleshaiah, Mohan, Jha, Deepak Kumar, Rambo, Carlos R., Li, Hu, North, Trista E., Collins, James J., Daley, George Q.

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A systems biology pipeline identifies regulatory networks for stem cell engineering by Kinney, Melissa A., Vo, Linda T., Frame, Jenna M., Barragan, Jessica, Conway, Ashlee J., Li, Shuai, Wong, Kwok-Kin, Collins, James J., Cahan, Patrick, North, Trista E., Lauffenburger, Douglas A, Daley, George Q.

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Chromatin-modifying enzymes as modulators of reprogramming by Onder, Tamer T., Kara, Nergis, Cherry, Anne, Sinha, Amit U., Zhu, Nan, Bernt, Kathrin M., Cahan, Patrick, Marcarci, B. Ogan, Unternaehrer, Juli, Armstrong, Scott A., Daley, George Q., Gupta, Piyush, Lander, Eric Steven

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CellComm infers cellular crosstalk that drives haematopoietic stem and progenitor cell development by Lummertz da Rocha, Edroaldo, Kubaczka, Caroline, Sugden, Wade W, Najia, Mohamad Ali, Jing, Ran, Markel, Arianna, LeBlanc, Zachary C, dos Santos Peixoto, Rafael, Falchetti, Marcelo, Collins, James J, North, Trista E, Daley, George Q

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Deconstructing transcriptional heterogeneity in pluripotent stem cells by Kumar, Roshan M., Cahan, Patrick, Shalek, Alex K., Satija, Rahul, DaleyKeyser, AJay, Li, Hu, Zhang, Jin, Pardee, Keith, Gennert, David, Trombetta, John J., Ferrante, Thomas C., Regev, Aviv, Daley, George Q., Collins, James J.

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LIN28B regulates transcription and potentiates MYCN-induced neuroblastoma through binding to ZNF143 at target gene promotors by Tao, Ting, Shi, Hui, Mariani, Luca, Abraham, Brian J, Durbin, Adam D, Zimmerman, Mark W, Powers, John T, Missios, Pavlos, Ross, Kenneth N, Perez-Atayde, Antonio R, Bulyk, Martha L, Young, Richard A, Daley, George Q, Look, A Thomas

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LIN28B regulates transcription and potentiates MYCN-induced neuroblastoma through binding to ZNF143 at target gene promotors by Tao, Ting, Shi, Hui, Mariani, Luca, Abraham, Brian J., Durbin, Adam D., Zimmerman, Mark W., Powers, John T., Missios, Pavlos, Ross, Kenneth N., Perez-Atayde, Antonio R., Bulyk, Martha L., Young, Richard A., Daley, George Q., Look, A. Thomas

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Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells by Guttman, Mitchell, Loewer, Sabine, Cabili, Moran N., Loh, Yuin-Han, Thomas, Kelly, Park, In Hyun, Garber, Manuel, Curran, Matthew, Onder, Tamer T., Agarwal, Suneet, Manos, Philip D., Datta, Sumon, Schlaeger, Thorsten M., Daley, George Q., Rinn, John L., Lander, Eric Steven

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Nanog-like Regulates Endoderm Formation through the Mxtx2-Nodal Pathway by Xu, Cong, Fan, Zi Peng, Fogley, Rachel, DiBiase, Anthony, Trompouki, Eirini, Unternaehrer, Juli, Xiong, Fengzhu, Torregroza, Ingrid, Evans, Todd, Megason, Sean G., Daley, George Q., Schier, Alexander F., Young, Richard A., Zon, Leonard I., Muller, Patrick, Young, Richard A.

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The Lin28/let-7 Axis Regulates Glucose Metabolism by Zhu, Hao, Shyh-Chang, Ng, Segrè, Ayellet V., Shinoda, Gen, Shah, Samar P., Einhorn, William S., Takeuchi, Ayumu, Engreitz, Jesse Michael, Hagan, John P., Kharas, Michael G., Urbach, Achia, Thornton, James E., Triboulet, Robinson, Gregory, Richard I., Altshuler, David, Daley, George Q.

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Musashi-2 regulates normal hematopoiesis and promotes aggressive myeloid leukemia by Kharas, Michael G., Lengner, Christopher J., Al-Shahrour, Fatima, Bullinger, Lars, Ball, Brian, Zaidi, Samir, Morgan, Kelly, Tam, Winnie, Paktinat, Mahnaz, Okabe, Rachel, Gozo, Maricel, Einhorn, William S., Lane, Steven W., Scholl, Claudia, Frohling, Stefan, Fleming, Mark, Ebert, Benjamin L., Gilliland, D. Gary, Jaenisch, Rudolf, Daley, George Q.

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Integrative Analyses of Human Reprogramming Reveal Dynamic Nature of Induced Pluripotency by Cacchiarelli, Davide, Trapnell, Cole, Ziller, Michael J., Soumillon, Magali, Cesana, Marcella, Karnik, Rahul, Donaghey, Julie, Smith, Zachary D., Ratanasirintrawoot, Sutheera, Zhang, Xiaolan, Ho Sui, Shannan J., Wu, Zhaoting, Akopian, Veronika, Gifford, Casey A., Doench, John, Rinn, John L., Daley, George Q., Meissner, Alexander, Mikkelsen, Tarjei S., Lander, Eric Steven

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Multiple mechanisms disrupt the let-7 microRNA family in neuroblastoma by Powers, John T., Tsanov, Kaloyan M., Pearson, Daniel S., Roels, Frederik, Spina, Catherine S., Ebright, Richard, Seligson, Marc, de Soysa, Yvanka, Cahan, Patrick, Theißen, Jessica, Tu, Ho-Chou, Han, Areum, Kurek, Kyle C., LaPier, Grace S., Osborne, Jihan K., Ross, Samantha J., Cesana, Marcella, Collins, James J., Berthold, Frank, Daley, George Q.

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Lineage Regulators Direct BMP and Wnt Pathways to Cell-Specific Programs during Differentiation and Regeneration by Trompouki, Eirini, Bowman, Teresa V., Lawton, Lee N., Fan, Zi Peng, Wu, Dai-Chen, DiBiase, Anthony, Martin, Corey S., Cech, Jennifer N., Sessa, Anna K., Leblanc, Jocelyn L., Li, Pulin, Durand, Ellen M., Mosimann, Christian, Heffner, Garrett C., Daley, George Q., Paulson, Robert F., Young, Richard A., Zon, Leonard I.

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