SplinectomeR Enables Group Comparisons in Longitudinal Microbiome Studies by Robin R. Shields-Cutler, Gabe A. Al-Ghalith, Moran Yassour, Moran Yassour, Dan Knights, Dan Knights

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High-Throughput flaA Short Variable Region Sequencing to Assess Campylobacter Diversity in Fecal Samples From Birds by Qian Zhang, Gabriel A. Al-Ghalith, Mayumi Kobayashi, Takahiro Segawa, Takahiro Segawa, Mitsuto Maeda, Satoshi Okabe, Dan Knights, Dan Knights, Dan Knights, Satoshi Ishii, Satoshi Ishii, Satoshi Ishii

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A Guide to Diet-Microbiome Study Design by Abigail J. Johnson, Jack Jingyuan Zheng, Jea Woo Kang, Anna Saboe, Dan Knights, Dan Knights, Angela M. Zivkovic

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SHI7 Is a Self-Learning Pipeline for Multipurpose Short-Read DNA Quality Control by Gabriel A. Al-Ghalith, Benjamin Hillmann, Kaiwei Ang, Robin Shields-Cutler, Dan Knights

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Complementary amplicon-based genomic approaches for the study of fungal communities in humans. by Timothy Heisel, Heather Podgorski, Christopher M Staley, Dan Knights, Michael J Sadowsky, Cheryl A Gale

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Microbial biogeography of public restroom surfaces. by Gilberto E Flores, Scott T Bates, Dan Knights, Christian L Lauber, Jesse Stombaugh, Rob Knight, Noah Fierer

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Author Correction: Shallow shotgun sequencing reduces technical variation in microbiome analysis by Alex J. La Reau, Noah B. Strom, Ellen Filvaroff, Konstantinos Mavrommatis, Tonya L. Ward, Dan Knights

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Shallow shotgun sequencing reduces technical variation in microbiome analysis by Alex J. La Reau, Noah B. Strom, Ellen Filvaroff, Konstantinos Mavrommatis, Tonya L. Ward, Dan Knights

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Diverse bacterial communities exist on canine skin and are impacted by cohabitation and time by Sheila Torres, Jonathan B. Clayton, Jessica L. Danzeisen, Tonya Ward, Hu Huang, Dan Knights, Timothy J. Johnson

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A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets. by Omry Koren, Dan Knights, Antonio Gonzalez, Levi Waldron, Nicola Segata, Rob Knight, Curtis Huttenhower, Ruth E Ley

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Development of the Human Mycobiome over the First Month of Life and across Body Sites by Tonya L. Ward, Maria Gloria Dominguez-Bello, Tim Heisel, Gabriel Al-Ghalith, Dan Knights, Cheryl A. Gale

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Participatory Microbiome Research With Hmong and Karen Communities: Lessons Learned by Pajau Vangay, Nancy Yang, Shannon Pergament, Mary Xiong, Bwei Paw, Rodolfo Batres, Dan Knights, Kathleen A. Culhane-Pera

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High-Fat Diet Changes Fungal Microbiomes and Interkingdom Relationships in the Murine Gut by Timothy Heisel, Emmanuel Montassier, Abigail Johnson, Gabriel Al-Ghalith, Yi-Wei Lin, Li-Na Wei, Dan Knights, Cheryl A. Gale

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Host Species and Captivity Distinguish the Microbiome Compositions of a Diverse Zoo-Resident Non-Human Primate Population by Maya O. Wills, Robin R. Shields-Cutler, Emily Brunmeier, Madison Weissenborn, Tami Murphy, Dan Knights, Timothy J. Johnson, Jonathan B. Clayton

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Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment. by Michael B Burns, Emmanuel Montassier, Juan Abrahante, Sambhawa Priya, David E Niccum, Alexander Khoruts, Timothy K Starr, Dan Knights, Ran Blekhman

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Heuristic and Hierarchical-Based Population Mining of Salmonella enterica Lineage I Pan-Genomes as a Platform to Enhance Food Safety by Joao Carlos Gomes-Neto, Joao Carlos Gomes-Neto, Natasha Pavlovikj, Carmen Cano, Baha Abdalhamid, Baha Abdalhamid, Gabriel Asad Al-Ghalith, Gabriel Asad Al-Ghalith, John Dustin Loy, Dan Knights, Dan Knights, Peter C. Iwen, Peter C. Iwen, Byron D. Chaves, Andrew K. Benson, Andrew K. Benson

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Evaluating the Information Content of Shallow Shotgun Metagenomics by Benjamin Hillmann, Gabriel A. Al-Ghalith, Robin R. Shields-Cutler, Qiyun Zhu, Daryl M. Gohl, Kenneth B. Beckman, Rob Knight, Dan Knights

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Evaluating the Information Content of Shallow Shotgun Metagenomics by Benjamin Hillmann, Gabriel A. Al-Ghalith, Robin R. Shields-Cutler, Qiyun Zhu, Daryl M. Gohl, Kenneth B. Beckman, Rob Knight, Dan Knights

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Hmong microbiome ANd Gout, Obesity, Vitamin C (HMANGO-C): A phase II clinical study protocol by Ya-Feng Wen, Kathleen A. Culhane-Pera, Shannon L. Pergament, Yeng Moua, Bai Vue, Toua Yang, Muaj Lo, Boguang Sun, Dan Knights, Robert J. Straka

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Hmong microbiome ANd Gout, Obesity, Vitamin C (HMANGO-C): A phase II clinical study protocol. by Ya-Feng Wen, Kathleen A Culhane-Pera, Shannon L Pergament, Yeng Moua, Bai Vue, Toua Yang, Muaj Lo, Boguang Sun, Dan Knights, Robert J Straka

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