Daniel S. Rokhsar

Daniel S. Rokhsar is a professor in the departments of Physics and of Molecular and Cell Biology at University of California, Berkeley and Head of the Plant Genomics Program at the Joint Genome Institute of the United States Department of Energy. His research is focused on understanding the origin, evolution, and diversity of animals by combining computational genome analysis with comparative developmental biology. Rokhsar received his Ph.D. in theoretical physics from Cornell University with doctoral advisors N. David Mermin and James Sethna, and joined the Berkeley faculty in 1989. Provided by Wikipedia
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  1. 1
    Transposon signatures of allopolyploid genome evolution

    Transposon signatures of allopolyploid genome evolution by Adam M. Session, Daniel S. Rokhsar

    Published 2023-06-01
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  2. 2
    Old can be new again: HAPPY whole genome sequencing, mapping and assembly

    Old can be new again: HAPPY whole genome sequencing, mapping and assembly by Zhihua Jiang, Daniel S. Rokhsar, Richard M. Harland

    Published 2009-01-01
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  3. 3
    Erratum

    Erratum by Zhihua Jiang, Daniel S. Rokhsar, Richard M. Harland

    Published 2009-01-01
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  4. 4
    CRISPR-Cas9-mediated knockout of CYP79D1 and CYP79D2 in cassava attenuates toxic cyanogen production

    CRISPR-Cas9-mediated knockout of CYP79D1 and CYP79D2 in cassava attenuates toxic cyanogen production by Michael A. Gomez, Kodiak C. Berkoff, Kodiak C. Berkoff, Baljeet K. Gill, Anthony T. Iavarone, Samantha E. Lieberman, Samantha E. Lieberman, Jessica M. Ma, Jessica M. Ma, Alex Schultink, Nicholas G. Karavolias, Nicholas G. Karavolias, Stacia K. Wyman, Raj Deepika Chauhan, Nigel J. Taylor, Brian J. Staskawicz, Brian J. Staskawicz, Myeong-Je Cho, Daniel S. Rokhsar, Daniel S. Rokhsar, Daniel S. Rokhsar, Daniel S. Rokhsar, Daniel S. Rokhsar, Jessica B. Lyons, Jessica B. Lyons

    Published 2023-03-01
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  5. 5
    Diversification of mandarin citrus by hybrid speciation and apomixis

    Diversification of mandarin citrus by hybrid speciation and apomixis by Guohong Albert Wu, Chikatoshi Sugimoto, Hideyasu Kinjo, Chika Azama, Fumimasa Mitsube, Manuel Talon, Frederick G. Gmitter, Daniel S. Rokhsar

    Published 2021-07-01
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  6. 6
    Development and Initial Characterization of a HAPPY Panel for Mapping the X. Tropicalis Genome

    Development and Initial Characterization of a HAPPY Panel for Mapping the X. Tropicalis Genome by Zhihua Jiang, Jennifer J. Michal, Kenneth B. Beckman, Jessica B. Lyons, Ming Zhang, Zengxiang Pan, Daniel S. Rokhsar, Richard M. Harland

    Published 2011-01-01
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  7. 7
    Phylogenomics illuminates the evolution of bobtail and bottletail squid (order Sepiolida)

    Phylogenomics illuminates the evolution of bobtail and bottletail squid (order Sepiolida) by Gustavo Sanchez, Fernando Á. Fernández-Álvarez, Morag Taite, Chikatoshi Sugimoto, Jeffrey Jolly, Oleg Simakov, Ferdinand Marlétaz, Louise Allcock, Daniel S. Rokhsar

    Published 2021-06-01
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  8. 8
    Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta

    Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta by Baosheng Wang, Julius P. Mojica, Nadeesha Perera, Cheng-Ruei Lee, John T. Lovell, Aditi Sharma, Catherine Adam, Anna Lipzen, Kerrie Barry, Daniel S. Rokhsar, Jeremy Schmutz, Thomas Mitchell-Olds

    Published 2019-06-01
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  9. 9
    Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta

    Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta by Baosheng Wang, Julius P. Mojica, Nadeesha Perera, Cheng-Ruei Lee, John T. Lovell, Aditi Sharma, Catherine Adam, Anna Lipzen, Kerrie Barry, Daniel S. Rokhsar, Jeremy Schmutz, Thomas Mitchell-Olds

    Published 2019-08-01
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  10. 10
    Tracing cancer evolution and heterogeneity using Hi-C

    Tracing cancer evolution and heterogeneity using Hi-C by Dan Daniel Erdmann-Pham, Sanjit Singh Batra, Timothy K. Turkalo, James Durbin, Marco Blanchette, Iwei Yeh, Hunter Shain, Boris C. Bastian, Yun S. Song, Daniel S. Rokhsar, Dirk Hockemeyer

    Published 2023-11-01
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  11. 11
    Analysis of meiosis in Pristionchus pacificus reveals plasticity in homolog pairing and synapsis in the nematode lineage

    Analysis of meiosis in Pristionchus pacificus reveals plasticity in homolog pairing and synapsis in the nematode lineage by Regina Rillo-Bohn, Renzo Adilardi, Therese Mitros, Barış Avşaroğlu, Lewis Stevens, Simone Köhler, Joshua Bayes, Clara Wang, Sabrina Lin, K Alienor Baskevitch, Daniel S Rokhsar, Abby F Dernburg

    Published 2021-08-01
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  12. 12
    Genome and transcriptome mechanisms driving cephalopod evolution

    Genome and transcriptome mechanisms driving cephalopod evolution by Caroline B. Albertin, Sofia Medina-Ruiz, Therese Mitros, Hannah Schmidbaur, Gustavo Sanchez, Z. Yan Wang, Jane Grimwood, Joshua J. C. Rosenthal, Clifton W. Ragsdale, Oleg Simakov, Daniel S. Rokhsar

    Published 2022-05-01
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  13. 13
    QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii

    QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii by Inosters Nzuki, Inosters Nzuki, Manpreet S. Katari, Jessen V. Bredeson, Esther Masumba, Fortunus Kapinga, Kasele Salum, Geoffrey S. Mkamilo, Trushar Shah, Jessica B. Lyons, Daniel S. Rokhsar, Steve Rounsley, Alexander A. Myburg, Morag E. Ferguson

    Published 2017-07-01
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  14. 14
    Candidate genes for field resistance to cassava brown streak disease revealed through the analysis of multiple data sources

    Candidate genes for field resistance to cassava brown streak disease revealed through the analysis of multiple data sources by Morag E. Ferguson, Rodney P. Eyles, Ana Luísa Garcia-Oliveira, Fortunus Kapinga, Fortunus Kapinga, Esther A. Masumba, Esther A. Masumba, Teddy Amuge, Teddy Amuge, Jessen V. Bredeson, Daniel S. Rokhsar, Jessica B. Lyons, Trushar Shah, Steve Rounsley, Geoffrey Mkamilo

    Published 2023-11-01
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  15. 15
    Chromosome evolution and the genetic basis of agronomically important traits in greater yam

    Chromosome evolution and the genetic basis of agronomically important traits in greater yam by Jessen V. Bredeson, Jessica B. Lyons, Ibukun O. Oniyinde, Nneka R. Okereke, Olufisayo Kolade, Ikenna Nnabue, Christian O. Nwadili, Eva Hřibová, Matthew Parker, Jeremiah Nwogha, Shengqiang Shu, Joseph Carlson, Robert Kariba, Samuel Muthemba, Katarzyna Knop, Geoffrey J. Barton, Anna V. Sherwood, Antonio Lopez-Montes, Robert Asiedu, Ramni Jamnadass, Alice Muchugi, David Goodstein, Chiedozie N. Egesi, Jonathan Featherston, Asrat Asfaw, Gordon G. Simpson, Jaroslav Doležel, Prasad S. Hendre, Allen Van Deynze, Pullikanti Lava Kumar, Jude E. Obidiegwu, Ranjana Bhattacharjee, Daniel S. Rokhsar

    Published 2022-04-01
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  16. 16
    Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs

    Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs by Jessen V. Bredeson, Austin B. Mudd, Sofia Medina-Ruiz, Therese Mitros, Owen Kabnick Smith, Kelly E. Miller, Jessica B. Lyons, Sanjit S. Batra, Joseph Park, Kodiak C. Berkoff, Christopher Plott, Jane Grimwood, Jeremy Schmutz, Guadalupe Aguirre-Figueroa, Mustafa K. Khokha, Maura Lane, Isabelle Philipp, Mara Laslo, James Hanken, Gwenneg Kerdivel, Nicolas Buisine, Laurent M. Sachs, Daniel R. Buchholz, Taejoon Kwon, Heidi Smith-Parker, Marcos Gridi-Papp, Michael J. Ryan, Robert D. Denton, John H. Malone, John B. Wallingford, Aaron F. Straight, Rebecca Heald, Dirk Hockemeyer, Richard M. Harland, Daniel S. Rokhsar

    Published 2024-01-01
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  17. 17
    Genome biology of the paleotetraploid perennial biomass crop Miscanthus

    Genome biology of the paleotetraploid perennial biomass crop Miscanthus by Therese Mitros, Adam M. Session, Brandon T. James, Guohong Albert Wu, Mohammad B. Belaffif, Lindsay V. Clark, Shengqiang Shu, Hongxu Dong, Adam Barling, Jessica R. Holmes, Jessica E. Mattick, Jessen V. Bredeson, Siyao Liu, Kerrie Farrar, Katarzyna Głowacka, Stanisław Jeżowski, Kerrie Barry, Won Byoung Chae, John A. Juvik, Justin Gifford, Adebosola Oladeinde, Toshihiko Yamada, Jane Grimwood, Nicholas H. Putnam, Jose De Vega, Susanne Barth, Manfred Klaas, Trevor Hodkinson, Laigeng Li, Xiaoli Jin, Junhua Peng, Chang Yeon Yu, Kweon Heo, Ji Hye Yoo, Bimal Kumar Ghimire, Iain S. Donnison, Jeremy Schmutz, Matthew E. Hudson, Erik J. Sacks, Stephen P. Moose, Kankshita Swaminathan, Daniel S. Rokhsar

    Published 2020-10-01
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