Environments that induce synthetic microbial ecosystems. 由 Niels Klitgord, Daniel Segrè

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Twenty Years of “Lipid World”: A Fertile Partnership with David Deamer 由 Doron Lancet, Daniel Segrè, Amit Kahana

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Emergent Subpopulation Behavior Uncovered with a Community Dynamic Metabolic Model of Escherichia coli Diauxic Growth 由 Antonella Succurro, Daniel Segrè, Oliver Ebenhöh

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Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals Diverse Metabolic Adaptations and Lifestyle Strategies 由 Elena Forchielli, Daniel Sher, Daniel Segrè

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Machine Learning Reveals Missing Edges and Putative Interaction Mechanisms in Microbial Ecosystem Networks 由 Demetrius DiMucci, Mark Kon, Daniel Segrè

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Temporal expression-based analysis of metabolism. 由 Sara B Collins, Ed Reznik, Daniel Segrè

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Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome 由 David B Bernstein, Floyd E Dewhirst, Daniel Segrè

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Addressing uncertainty in genome-scale metabolic model reconstruction and analysis 由 David B. Bernstein, Snorre Sulheim, Eivind Almaas, Daniel Segrè

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Toward FAIR Representations of Microbial Interactions 由 Alan R. Pacheco, Charlie Pauvert, Dileep Kishore, Daniel Segrè

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Signatures of arithmetic simplicity in metabolic network architecture. 由 William J Riehl, Paul L Krapivsky, Sidney Redner, Daniel Segrè

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Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions 由 Charles Jo, David B. Bernstein, Natalie Vaisman, Horacio M. Frydman, Daniel Segrè

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Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation 由 Dileep Kishore, Gabriel Birzu, Zhenjun Hu, Charles DeLisi, Kirill S. Korolev, Daniel Segrè

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Multi-Attribute Subset Selection enables prediction of representative phenotypes across microbial populations 由 Konrad Herbst, Taiyao Wang, Elena J. Forchielli, Meghan Thommes, Ioannis Ch. Paschalidis, Daniel Segrè

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Computational design and engineering of an Escherichia coli strain producing the nonstandard amino acid para-aminophenylalanine 由 Ali R. Zomorrodi, Colin Hemez, Pol Arranz-Gibert, Terrence Wu, Farren J. Isaacs, Daniel Segrè

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Unlocking the magic in mycelium: Using synthetic biology to optimize filamentous fungi for biomanufacturing and sustainability 由 Charles Jo, Jing Zhang, Jenny M. Tam, George M. Church, Ahmad S. Khalil, Daniel Segrè, Tzu-Chieh Tang

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Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics 由 William R. Harcombe, William J. Riehl, Ilija Dukovski, Brian R. Granger, Alex Betts, Alex H. Lang, Gracia Bonilla, Amrita Kar, Nicholas Leiby, Pankaj Mehta, Christopher J. Marx, Daniel Segrè

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Nasopharyngeal Dysbiosis Precedes the Development of Lower Respiratory Tract Infections in Young Infants, a Longitudinal Infant Cohort Study [version 2; peer review: 1 approved, 2... 由 William Evan Johnson, Daniel Segrè, Christopher J Gill, William MacLeod, Donald M Thea, Tyler Faits, Rotem Lapidot, Mushal Allam, Arshad Ismail, Geoffrey Kwenda, Lawrence Mwananyanda, Zamantungwak Khumalo, Ruth Nakazwe, Zachariah Mupila

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Deep sequencing of the oral microbiome reveals signatures of periodontal disease. 由 Bo Liu, Lina L Faller, Niels Klitgord, Varun Mazumdar, Mohammad Ghodsi, Daniel D Sommer, Theodore R Gibbons, Todd J Treangen, Yi-Chien Chang, Shan Li, O Colin Stine, Hatice Hasturk, Simon Kasif, Daniel Segrè, Mihai Pop, Salomon Amar

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