Latent-space embedding of expression data identifies gene signatures from sputum samples of asthmatic patients by Shaoke Lou, Tianxiao Li, Daniel Spakowicz, Xiting Yan, Geoffrey Lowell Chupp, Mark Gerstein

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837 Preliminary insights into the impact of tumor microbiome in head and neck squamous cell carcinoma by Sachin Jhawar, Vidhya Karivedu, Rebecca Hoyd, Caroline Wheeler, Priyanka Bhateja, Marcelo Bonomi, Daniel Spakowicz

Deciphering the Tumor–Immune–Microbe Interactions in HPV-Negative Head and Neck Cancer by Min Hu, Samuel Coleman, Muhammad Zaki Hidayatullah Fadlullah, Daniel Spakowicz, Christine H. Chung, Aik Choon Tan

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168 Associations of high toll-like receptor 3 gene expression and favorable anti-tumor immune microenvironment in metastatic clear cell renal cell carcinoma treated with immune che... by Zihai Li, Yuanquan Yang, Amir Mortazavi, Mingjia Li, Daniel Spakowicz, Komal Das, Jayajit Das, Giuseppe Giuliani, Anil Parwani

Emerging Immunotherapy Approaches for Advanced Clear Cell Renal Cell Carcinoma by Lingbin Meng, Katharine A. Collier, Peng Wang, Zihai Li, Paul Monk, Amir Mortazavi, Zhiwei Hu, Daniel Spakowicz, Linghua Zheng, Yuanquan Yang

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Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients by Daniel Spakowicz, Shaoke Lou, Brian Barron, Jose L. Gomez, Tianxiao Li, Qing Liu, Nicole Grant, Xiting Yan, Rebecca Hoyd, George Weinstock, Geoffrey L. Chupp, Mark Gerstein

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Post-diagnosis dietary insulinemic potential and survival outcomes among colorectal cancer patients by Fred K. Tabung, Anne Noonan, Dong Hoon Lee, Mingyang Song, Steven K. Clinton, Daniel Spakowicz, Kana Wu, En Cheng, Jeffrey A. Meyerhardt, Charles S. Fuchs, Edward L. Giovannucci

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Association between Tumor Microbiome and Hypoxia across Anatomic Subsites of Head and Neck Cancers by Aastha Dhakal, Rituraj Upadhyay, Caroline Wheeler, Rebecca Hoyd, Vidhya Karivedu, Mauricio E. Gamez, Sasha Valentin, Meade Vanputten, Priyanka Bhateja, Marcelo Bonomi, David J. Konieczkowski, Sujith Baliga, Darrion L. Mitchell, John C. Grecula, Dukagjin M. Blakaj, Nicholas C. Denko, Sachin R. Jhawar, Daniel Spakowicz

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Inferring the role of the microbiome on survival in patients treated with immune checkpoint inhibitors: causal modeling, timing, and classes of concomitant medications by Daniel Spakowicz, Rebecca Hoyd, Mitchell Muniak, Marium Husain, James S. Bassett, Lei Wang, Gabriel Tinoco, Sandip H. Patel, Jarred Burkart, Abdul Miah, Mingjia Li, Andrew Johns, Madison Grogan, David P. Carbone, Claire F. Verschraegen, Kari L. Kendra, Gregory A. Otterson, Lang Li, Carolyn J. Presley, Dwight H. Owen

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