Differentially correlated genes in co-expression networks control phenotype transitions [version 1; referees: 1 approved, 2 approved with reservations] by Lina D. Thomas, Dariia Vyshenska, Natalia Shulzhenko, Anatoly Yambartsev, Andrey Morgun

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Transkingdom network reveals bacterial players associated with cervical cancer gene expression program by Khiem Chi Lam, Dariia Vyshenska, Jialu Hu, Richard Rosario Rodrigues, Anja Nilsen, Ryszard A. Zielke, Nicholas Samuel Brown, Eva-Katrine Aarnes, Aleksandra E. Sikora, Natalia Shulzhenko, Heidi Lyng, Andrey Morgun

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HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi by Erin E. Nuccio, Steven J. Blazewicz, Marissa Lafler, Ashley N. Campbell, Anne Kakouridis, Jeffrey A. Kimbrel, Jessica Wollard, Dariia Vyshenska, Robert Riley, Andy Tomatsu, Rachel Hestrin, Rex R. Malmstrom, Mary Firestone, Jennifer Pett-Ridge

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A standardized quantitative analysis strategy for stable isotope probing metagenomics by Dariia Vyshenska, Pranav Sampara, Kanwar Singh, Andy Tomatsu, W. Berkeley Kauffman, Erin E. Nuccio, Steven J. Blazewicz, Jennifer Pett-Ridge, Katherine B. Louie, Neha Varghese, Matthew Kellom, Alicia Clum, Robert Riley, Simon Roux, Emiley A. Eloe-Fadrosh, Ryan M. Ziels, Rex R. Malmstrom

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