Editorial: Unveiling novel aspects of SARS-CoV-2 to combat COVID-19 by Nimisha Ghosh, Nimisha Ghosh, Indrajit Saha, Dariusz Plewczynski, Dariusz Plewczynski

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Editorial: SARS-CoV-2: From Genetic Variability to Vaccine Design by Indrajit Saha, Nimisha Ghosh, Nimisha Ghosh, Dariusz Plewczynski, Dariusz Plewczynski

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COVID-DeepPredictor: Recurrent Neural Network to Predict SARS-CoV-2 and Other Pathogenic Viruses by Indrajit Saha, Nimisha Ghosh, Debasree Maity, Arjit Seal, Dariusz Plewczynski, Dariusz Plewczynski

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Genomic Marks Associated with Chromatin Compartments in the CTCF, RNAPII Loop and Genomic Windows by Teresa Szczepińska, Ayatullah Faruk Mollah, Dariusz Plewczynski

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ShapeGTB: the role of local DNA shape in prioritization of functional variants in human promoters with machine learning by Maja Malkowska, Julian Zubek, Dariusz Plewczynski, Lucjan S. Wyrwicz

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Identification of Breast Cancer Subtype Specific MicroRNAs Using Survival Analysis to Find Their Role in Transcriptomic Regulation by Michał Denkiewicz, Michał Denkiewicz, Michał Denkiewicz, Indrajit Saha, Somnath Rakshit, Somnath Rakshit, Jnanendra Prasad Sarkar, Jnanendra Prasad Sarkar, Dariusz Plewczynski, Dariusz Plewczynski

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FunPred 3.0: improved protein function prediction using protein interaction network by Sovan Saha, Piyali Chatterjee, Subhadip Basu, Mita Nasipuri, Dariusz Plewczynski

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Enhanced performance of gene expression predictive models with protein-mediated spatial chromatin interactions by Mateusz Chiliński, Jakub Lipiński, Abhishek Agarwal, Yijun Ruan, Dariusz Plewczynski

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PFP-GO: Integrating protein sequence, domain and protein-protein interaction information for protein function prediction using ranked GO terms by Kaustav Sengupta, Kaustav Sengupta, Kaustav Sengupta, Sovan Saha, Anup Kumar Halder, Anup Kumar Halder, Piyali Chatterjee, Mita Nasipuri, Subhadip Basu, Dariusz Plewczynski, Dariusz Plewczynski

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Exploring 3D chromatin contacts in gene regulation: The evolution of approaches for the identification of functional enhancer-promoter interaction by Hang Xu, Shijie Zhang, Xianfu Yi, Dariusz Plewczynski, Mulin Jun Li

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Identification of miRNA Biomarkers for Diverse Cancer Types Using Statistical Learning Methods at the Whole-Genome Scale by Jnanendra Prasad Sarkar, Jnanendra Prasad Sarkar, Indrajit Saha, Adrian Lancucki, Nimisha Ghosh, Michal Wlasnowolski, Grzegorz Bokota, Grzegorz Bokota, Ashmita Dey, Piotr Lipinski, Dariusz Plewczynski, Dariusz Plewczynski

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Multi-level machine learning prediction of protein–protein interactions in Saccharomyces cerevisiae by Julian Zubek, Marcin Tatjewski, Adam Boniecki, Maciej Mnich, Subhadip Basu, Dariusz Plewczynski

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ML-DTD: Machine Learning-Based Drug Target Discovery for the Potential Treatment of COVID-19 by Sovan Saha, Piyali Chatterjee, Anup Kumar Halder, Mita Nasipuri, Subhadip Basu, Dariusz Plewczynski

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Social adaptation in multi-agent model of linguistic categorization is affected by network information flow. by Julian Zubek, Michał Denkiewicz, Juliusz Barański, Przemysław Wróblewski, Joanna Rączaszek-Leonardi, Dariusz Plewczynski

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Spatial chromatin architecture alteration by structural variations in human genomes at the population scale by Michal Sadowski, Agnieszka Kraft, Przemyslaw Szalaj, Michal Wlasnowolski, Zhonghui Tang, Yijun Ruan, Dariusz Plewczynski

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Rule-Based Pruning and In Silico Identification of Essential Proteins in Yeast PPIN by Anik Banik, Souvik Podder, Sovan Saha, Piyali Chatterjee, Anup Kumar Halder, Mita Nasipuri, Subhadip Basu, Dariusz Plewczynski

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Three-Dimensional Segmentation and Reconstruction of Neuronal Nuclei in Confocal Microscopic Images by Błażej Ruszczycki, Katarzyna Karolina Pels, Agnieszka Walczak, Katarzyna Zamłyńska, Michał Such, Michał Such, Andrzej Antoni Szczepankiewicz, Małgorzata Hanna Hall, Małgorzata Hanna Hall, Adriana Magalska, Marta Magnowska, Artur Wolny, Grzegorz Bokota, Subhadip Basu, Ayan Pal, Dariusz Plewczynski, Dariusz Plewczynski, Grzegorz Marek Wilczyński

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Species used for drug testing reveal different inhibition susceptibility for 17beta-hydroxysteroid dehydrogenase type 1. by Gabriele Möller, Bettina Husen, Dorota Kowalik, Leena Hirvelä, Dariusz Plewczynski, Leszek Rychlewski, Josef Messinger, Hubert Thole, Jerzy Adamski

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PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies by Grzegorz Bokota, Jacek Sroka, Subhadip Basu, Nirmal Das, Pawel Trzaskoma, Yana Yushkevich, Agnieszka Grabowska, Adriana Magalska, Dariusz Plewczynski

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Multi-scale phase separation by explosive percolation with single-chromatin loop resolution by Kaustav Sengupta, Michał Denkiewicz, Mateusz Chiliński, Teresa Szczepińska, Ayatullah Faruk Mollah, Sevastianos Korsak, Raissa D'Souza, Yijun Ruan, Dariusz Plewczynski

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