Precision Subtypes of T Cell Mediated Rejection Identified by Molecular Profile by Paul Ostrom Kadota, Zahraa eHajjiri, Patricia eFinn, David L Perkins, David L Perkins

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WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences. by Ahmed A Metwally, Yang Dai, Patricia W Finn, David L Perkins

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Long non-coding RNAs (lncRNAs) NEAT1 and MALAT1 are differentially expressed in severe COVID-19 patients: An integrated single-cell analysis by Kai Huang, Catherine Wang, Christen Vagts, Vanitha Raguveer, Patricia W. Finn, David L. Perkins

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Long non-coding RNAs (lncRNAs) NEAT1 and MALAT1 are differentially expressed in severe COVID-19 patients: An integrated single-cell analysis. by Kai Huang, Catherine Wang, Christen Vagts, Vanitha Raguveer, Patricia W Finn, David L Perkins

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Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks. by Ahmed A Metwally, Philip S Yu, Derek Reiman, Yang Dai, Patricia W Finn, David L Perkins

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MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies by Ahmed A. Metwally, Jie Yang, Christian Ascoli, Yang Dai, Patricia W. Finn, David L. Perkins

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Transmission Dynamics of Large Coronavirus Disease Outbreak in Homeless Shelter, Chicago, Illinois, USA, 2020 by Yi-Shin Chang, Stockton Mayer, Elizabeth S. Davis, Evelyn Figueroa, Paul Leo, Patricia W. Finn, David L. Perkins

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Gene Co-expression Networks Identifies Common Hub Genes Between Cutaneous Sarcoidosis and Discoid Lupus Erythematosus by Melissa A. Nickles, Kai Huang, Yi-Shin Chang, Maria M. Tsoukas, Nadera J. Sweiss, David L. Perkins, Patricia W. Finn

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Analysis of Exosomal MicroRNA Dynamics in Response to Rhinovirus Challenge in a Longitudinal Case-Control Study of Asthma by Wangfei Wang, Anirban Sinha, René Lutter, Jie Yang, Christian Ascoli, Peter J. Sterk, Nicole K. Nemsick, David L. Perkins, Patricia W. Finn

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Atopic asthmatic immune phenotypes associated with airway microbiota and airway obstruction. by Benjamin A Turturice, Halvor S McGee, Brian Oliver, Melissa Baraket, Brian T Nguyen, Christian Ascoli, Ravi Ranjan, Asha Rani, David L Perkins, Patricia W Finn

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Altered transcription factor targeting is associated with differential peripheral blood mononuclear cell proportions in sarcoidosis by Christian Ascoli, Cody A. Schott, Yue Huang, Benjamin A. Turturice, Wangfei Wang, Naomi Ecanow, Nadera J. Sweiss, Nadera J. Sweiss, David L. Perkins, Patricia W. Finn

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Perinatal granulopoiesis and risk of pediatric asthma by Benjamin A Turturice, Juliana Theorell, Mary Dawn Koenig, Lisa Tussing-Humphreys, Diane R Gold, Augusto A Litonjua, Emily Oken, Sheryl L Rifas-Shiman, David L Perkins, Patricia W Finn

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Unsupervised Clustering Reveals Sarcoidosis Phenotypes Marked by a Reduction in Lymphocytes Relate to Increased Inflammatory Activity on 18FDG-PET/CT by Christen Vagts, Christian Ascoli, Dustin R. Fraidenburg, Robert P. Baughman, Yue Huang, Russell Edafetanure-Ibeh, Samreen Ahmed, Benjamin Levin, Benjamin Levin, Yang Lu, David L. Perkins, Patricia W. Finn, Nadera J. Sweiss, Nadera J. Sweiss

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Trimer IgG and neutralising antibody response to COVID-19 mRNA vaccination in individuals with sarcoidosis by Christen L. Vagts, Yi-Shin Chang, Christian Ascoli, Jessica M. Lee, Kai Huang, Yue Huang, Ruth A. Cherian, Nandini Sarup, Samantha R. Warpecha, Russell Edafetanure-Ibeh, Md-Ruhul Amin, Tasmin Sultana, Mahmood Ghassemi, Nadera J. Sweiss, Richard Novak, David L. Perkins, Patricia W. Finn

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Network Analysis of Dysregulated Immune Response to COVID-19 mRNA Vaccination in Hemodialysis Patients by Yi-Shin Chang, Jessica M. Lee, Kai Huang, Christen L. Vagts, Christian Ascoli, Russell Edafetanure-Ibeh, Yue Huang, Ruth A. Cherian, Nandini Sarup, Samantha R. Warpecha, Sunghyun Hwang, Rhea Goel, Benjamin A. Turturice, Cody Schott, Montserrat H. Martinez, Patricia W. Finn, David L. Perkins

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Disruption of innate defense responses by endoglycosidase HPSE promotes cell survival by Alex Agelidis, Benjamin A. Turturice, Rahul K. Suryawanshi, Tejabhiram Yadavalli, Dinesh Jaishankar, Joshua Ames, James Hopkins, Lulia Koujah, Chandrashekhar D. Patil, Satvik R. Hadigal, Evan J. Kyzar, Anaamika Campeau, Jacob M. Wozniak, David J. Gonzalez, Israel Vlodavsky, Jin-ping Li, David L. Perkins, Patricia W. Finn, Deepak Shukla

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Altered transcriptomic immune responses of maintenance hemodialysis patients to the COVID-19 mRNA vaccine by Yi-Shin Chang, Kai Huang, Jessica M Lee, Christen L Vagts, Christian Ascoli, Md-Ruhul Amin, Mahmood Ghassemi, Claudia M Lora, Russell Edafetanure-Ibeh, Yue Huang, Ruth A Cherian, Nandini Sarup, Samantha R Warpecha, Sunghyun Hwang, Rhea Goel, Benjamin A Turturice, Cody Schott, Montserrat Hernandez, Yang Chen, Julianne Jorgensen, Wangfei Wang, Mladen Rasic, Richard M Novak, Patricia W Finn, David L Perkins

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