An adversarial training framework for mitigating algorithmic biases in clinical machine learning by Jenny Yang, Andrew A. S. Soltan, David W. Eyre, Yang Yang, David A. Clifton

Get full text

The quality of vital signs measurements and value preferences in electronic medical records varies by hospital, specialty, and patient demographics by Niall Jackson, Jessica Woods, Peter Watkinson, Andrew Brent, Tim E. A. Peto, A. Sarah Walker, David W. Eyre

Get full text

Time-of-Day Variation in SARS-CoV-2 RNA Levels during the Second Wave of COVID-19 by Xiaodong Zhuang, Wei Wang, Helene Borrmann, Peter Balfe, Philippa C. Matthews, David W. Eyre, Elizabeth B. Klerman, Jane A. McKeating

Get full text

Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission. by David W Eyre, Madeleine L Cule, David Griffiths, Derrick W Crook, Tim E A Peto, A Sarah Walker, Daniel J Wilson

Get full text

Probabilistic transmission models incorporating sequencing data for healthcare-associated Clostridioides difficile outperform heuristic rules and identify strain-specific differenc... by David W Eyre, Mirjam Laager, A Sarah Walker, Ben S Cooper, Daniel J Wilson, CDC Modeling Infectious Diseases in Healthcare Program (MInD-Healthcare)

Get full text

Improving patient flow during infectious disease outbreaks using machine learning for real-time prediction of patient readiness for discharge. by Jennifer A Bishop, Hamza A Javed, Rasheed El-Bouri, Tingting Zhu, Thomas Taylor, Tim Peto, Peter Watkinson, David W Eyre, David A Clifton

Get full text

Human and Porcine Transmission of Clostridioides difficile Ribotype 078, Europe by Geraldine Moloney, David W. Eyre, Micheál Mac Aogáin, Máire C. McElroy, Alison Vaughan, Tim E.A. Peto, Derrick W. Crook, Thomas R. Rogers

Get full text

Asymptomatic Clostridium difficile colonisation and onward transmission. by David W Eyre, David Griffiths, Alison Vaughan, Tanya Golubchik, Milind Acharya, Lily O'Connor, Derrick W Crook, A Sarah Walker, Tim E A Peto

Get full text

RNA polymerase mutations cause cephalosporin resistance in clinical Neisseria gonorrhoeae isolates by Samantha G Palace, Yi Wang, Daniel HF Rubin, Michael A Welsh, Tatum D Mortimer, Kevin Cole, David W Eyre, Suzanne Walker, Yonatan H Grad

Get full text

Predicting individual patient and hospital-level discharge using machine learning by Jia Wei, Jiandong Zhou, Zizheng Zhang, Kevin Yuan, Qingze Gu, Augustine Luk, Andrew J. Brent, David A. Clifton, A. Sarah Walker, David W. Eyre

Get full text

Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy by Daniel R Knight, Korakrit Imwattana, Brian Kullin, Enzo Guerrero-Araya, Daniel Paredes-Sabja, Xavier Didelot, Kate E Dingle, David W Eyre, César Rodríguez, Thomas V Riley

Get full text

Development and validation of early warning score systems for COVID‐19 patients by Alexey Youssef, Samaneh Kouchaki, Farah Shamout, Jacob Armstrong, Rasheed El‐Bouri, Thomas Taylor, Drew Birrenkott, Baptiste Vasey, Andrew Soltan, Tingting Zhu, David A. Clifton, David W. Eyre

Get full text

Clostridium difficile trehalose metabolism variants are common and not associated with adverse patient outcomes when variably present in the same lineageResearch in context by David W. Eyre, Xavier Didelot, Anthony M. Buckley, Jane Freeman, Ines B. Moura, Derrick W. Crook, Tim E.A. Peto, A. Sarah Walker, Mark H. Wilcox, Kate E. Dingle

Get full text

Predicting future hospital antimicrobial resistance prevalence using machine learning by Karina-Doris Vihta, Emma Pritchard, Koen B. Pouwels, Susan Hopkins, Rebecca L. Guy, Katherine Henderson, Dimple Chudasama, Russell Hope, Berit Muller-Pebody, Ann Sarah Walker, David Clifton, David W. Eyre

Get full text

Transmission of community- and hospital-acquired SARS-CoV-2 in hospital settings in the UK: A cohort study. by Yin Mo, David W Eyre, Sheila F Lumley, Timothy M Walker, Robert H Shaw, Denise O'Donnell, Lisa Butcher, Katie Jeffery, Christl A Donnelly, Oxford COVID infection review team, Ben S Cooper

Get full text

Short-term genome stability of serial Clostridium difficile ribotype 027 isolates in an experimental gut model and recurrent human disease. by David W Eyre, A Sarah Walker, Jane Freeman, Simon D Baines, Warren N Fawley, Caroline H Chilton, David Griffiths, Alison Vaughan, Derrick W Crook, Tim E A Peto, Mark H Wilcox

Get full text

Penicillin Binding Protein Substitutions Cooccur with Fluoroquinolone Resistance in Epidemic Lineages of Multidrug-Resistant Clostridioides difficile by Kate E. Dingle, Jane Freeman, Xavier Didelot, T. Phuong Quan, David W. Eyre, Jeremy Swann, William D. Spittal, Emma V. Clark, Keith A. Jolley, A. Sarah Walker, Mark H. Wilcox, Derrick W. Crook

Get full text

Retrospective analysis of hospital electronic health records reveals unseen cases of acute hepatitis with unknown aetiology in adults in Oxfordshire by Cedric C. S. Tan, Gavin Kelly, Jack Cregan, Joseph D. Wilson, Tim James, Meera Chand, Susan Hopkins, Maaike Swets, J. Kenneth Baillie, Katie Jeffery, Ann Sarah Walker, David W. Eyre, Nicole Stoesser, Philippa C. Matthews

Get full text

Genomic epidemiology describes introduction and outbreaks of antifungal drug-resistant Candida auris by Dana Kappel, Hugh Gifford, Amelie Brackin, Alireza Abdolrasouli, David W. Eyre, Katie Jeffery, Silke Schlenz, David M. Aanensen, Colin S. Brown, Andrew Borman, Elizabeth Johnson, Alison Holmes, Darius Armstrong-James, Matthew C. Fisher, Johanna Rhodes

Get full text

Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices by Nicholas D Sanderson, Teresa L Street, Dona Foster, Jeremy Swann, Bridget L Atkins, Andrew J Brent, Martin A McNally, Sarah Oakley, Adrian Taylor, Tim E A Peto, Derrick W Crook, David W Eyre

Get full text