Reconstruction of Cell-type-Specific Interactomes at Single-Cell Resolution by Mohammadi, Shahin, Davila Velderrain, Jose, Kellis, Manolis

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A multiresolution framework to characterize single-cell state landscapes by Mohammadi, Shahin, Davila-Velderrain, Jose, Kellis, Manolis

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Integrative construction of regulatory region networks in 127 human reference epigenomes by matrix factorization by Liu, Dianbo, Davila-Velderrain, Jose, Zhang, Zhizhuo, Kellis, Manolis

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NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data by He, Liang, Davila-Velderrain, Jose, Sumida, Tomokazu S, Hafler, David A, Kellis, Manolis, Kulminski, Alexander M

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Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration by Mohammadi, Shahin, Davila Velderrain, Jose, Goods, Brittany A., Shalek, Alexander K, Love, Christopher J., Kellis, Manolis

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BACE-1 inhibition facilitates the transition from homeostatic microglia to DAM-1 by Singh, Neeraj, Benoit, Marc R, Zhou, John, Das, Brati, Davila-Velderrain, Jose, Kellis, Manolis, Tsai, Li-Huei, Hu, Xiangyou, Yan, Riqiang

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Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble by Marco, Asaf, Meharena, Hiruy S., Dileep, Vishnu, Raju, Ravikiran M., Davila Velderrain, Jose, Zhang, Amy Letao, Adaikkan, Chinnakkaruppan, Young, Jennie Zin-Ney, Gao, Fan, Kellis, Manolis, Tsai, Li-Huei

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Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation by Lee, Hyeseung, Fenster, Robert J, Pineda, S Sebastian, Gibbs, Whitney S, Mohammadi, Shahin, Davila-Velderrain, Jose, Garcia, Francisco J, Therrien, Martine, Novis, Hailey S, Gao, Fan, Wilkinson, Hilary, Vogt, Thomas, Kellis, Manolis, LaVoie, Matthew J, Heiman, Myriam

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Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration by Welch, Gwyneth M, Boix, Carles A, Schmauch, Eloi, Davila-Velderrain, Jose, Victor, Matheus B, Dileep, Vishnu, Bozzelli, P Lorenzo, Su, Qiao, Cheng, Jemmie D, Lee, Audrey, Leary, Noelle S, Pfenning, Andreas R, Kellis, Manolis, Tsai, Li-Huei

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Reconstruction of the human blood–brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes by Blanchard, Joel W, Bula, Michael, Davila-Velderrain, Jose, Akay, Leyla Anne, Zhu, Lena, Frank, Alexander, Victor, Matheus B, Bonner, Julia Maeve, Mathys, Hansruedi, Lin, Yuan-Ta, Ko, Tak, Bennett, David A, Cam, Hugh P, Kellis, Manolis, Tsai, Li-Huei

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Inferring multimodal latent topics from electronic health records by Li, Yue, Nair, Pratheeksha, Lu, Xing Han, Wen, Zhi, Wang, Yuening, Dehaghi, Amir Ardalan Kalantari, Miao, Yan, Liu, Weiqi, Ordog, Tamas, Biernacka, Joanna M, Ryu, Euijung, Olson, Janet E, Frye, Mark A, Liu, Aihua, Guo, Liming, Marelli, Ariane, Ahuja, Yuri, Davila-Velderrain, Jose, Kellis, Manolis

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APOE4 impairs myelination via cholesterol dysregulation in oligodendrocytes by Blanchard, Joel W, Akay, Leyla Anne, Davila-Velderrain, Jose, von Maydell, Djuna, Mathys, Hansruedi, Davidson, Shawn M, Effenberger, Audrey, Chen, Chih-Yu, Maner-Smith, Kristal, Hajjar, Ihab, Ortlund, Eric A, Bula, Michael, Agbas, Emre, Ng, Ayesha, Jiang, Xueqiao, Kahn, Martin, Blanco-Duque, Cristina, Lavoie, Nicolas, Liu, Liwang, Reyes, Ricardo, Lin, Yuan-Ta, Ko, Tak, R’Bibo, Lea, Ralvenius, William T, Bennett, David A, Cam, Hugh P, Kellis, Manolis, Tsai, Li-Huei

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