Study of 236U/238U ratio at CIRCE using a 16-strip silicon detector with a TOF system by De Cesare M., De Cesare N., D’Onofrio A., Gialanella L., Terrasi F.

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Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis. by Weirather, J, de Cesare, M, Wang, Y, Piazza, P, Sebastiano, V, Wang, X, Buck, D, Au, K

Deep sequencing of hepatitis B virus (HBV) genomes using rolling circle amplification and Nanopore by Mcnaughton, A, Bonsall, D, De Cesare, M, Parks, D, Brown, A, Bowden, R, Barnes, E, Matthews, P

Oxford Nanopore MinION sequencing enables rapid whole-genome assembly of Rickettsia typhi in a resource-limited setting by Elliott, I, Batty, E, Ming, D, Robinson, M, Nawtaisong, P, De Cesare, M, Newton, P, Bowden, R

Oxford nanopore MinION sequencing enables rapid whole genome assembly of rickettsia typhi in a resource-limited setting by Elliott, I, Batty, E, Ming, D, Robinson, M, Nawtaisong, P, De Cesare, M, Newton, P, Bowden, R

PHYLOSCANNER: Inferring transmission from within- and petween-host pathogen genetic diversity. by Wymant, C, Hall, M, Ratmann, O, Bonsall, D, Golubchik, T, de Cesare, M, Gall, A, Cornelissen, M, Fraser, C

Targeted capture and sequencing of Orientia tsutsugamushi genomes from chiggers and humans by Elliott, I, Thangnimitchok, N, de Cesare, M, Linsuwanon, P, Paris, DH, Day, NPJ, Newton, PN, Bowden, R, Batty, EM

Targeted capture and sequencing of Orientia tsutsugamushi genomes from chiggers and humans by Elliott, I, Thangnimitchok, N, de Cesare, M, Linsuwanon, P, Paris, D, Day, NPJ, Newton, P, Bowden, R, Batty, E

The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA by Zhao, L, Hall, M, de Cesare, M, MacIntyre-Cockett, G, Lythgoe, K, Fraser, C, Bonsall, D, Golubchik, T, Ferretti, L

High-intermediate endemic prevalence of hepatitis B virus amongst febrile patients in Bangladesh, including evidence of occult infection by Chowdhury, FR, McNaughton, AL, Amin, MR, Barai, L, De Cesare, M, Bowden, R, Klenerman, P, Das, BC, Dunachie, SJ, Matthews, PC

Epstein-Barr virus reactivation in sepsis due to community-acquired pneumonia is associated with increased morbidity and an immunosuppressed host transcriptomic endotype by Goh, C, Burnham, KL, Ansari, MA, de Cesare, M, Golubchik, T, Hutton, P, Overend, LE, Davenport, EE, Hinds, CJ, Bowden, R, Knight, JC

Prolonged Zika virus RNA detection in semen of immunosuppressed patient by Petridou, C, Bonsall, D, Ahmed, A, Roberts, M, Bell, C, De Cesare, M, Bowden, R, Graham, V, Bailey, D, Simpson, A, Aarons, E

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV) by McNaughton, AL, Roberts, HE, Bonsall, D, De Cesare, M, Mokaya, J, Lumley, SF, Golubchik, T, Piazza, P, Martin, J, De Lara, C, Brown, A, Ansari, MA, Bowden, R, Barnes, E, Matthews, P

Simultaneous viral whole-genome sequencing and differential expression profiling in respiratory syncytial virus infection of infants by Lin, G-L, Golubchik, T, Drysdale, S, O'Connor, D, Jefferies, K, Brown, A, de Cesare, M, Bonsall, D, Ansari, MA, Aerssens, J, Bont, L, Openshaw, P, Martinón-Torres, F, Bowden, R, Pollard, AJ

HIV genotyping and phylogenetics in the HPTN 071 (PopART) study: validation of a high-throughput sequencing assay for viral load quantification, genotyping, resistance testing and... by Bonsall, D, Golubchik, T, Kosloff, B, Limbada, M, De Cesare, M, Schaap, A, Hall, M, Wymant, C, Macintyre-Cockett, G, Brown, A, Ansari, MA, Floyd, S, Hayes, R, Ayles, H, Fidler, S, Fraser, C, Grp, HPTNPS

Evidence of tenofovir resistance in chronic hepatitis B virus (HBV) infection: an observational case series of South African adults by Mokaya, J, Maponga, TG, McNaughton, AL, Van Schalkwyk, M, Hugo, S, Singer, JB, Sreenu, VB, Bonsall, D, de Cesare, M, Andersson, M, Gabriel, S, Taljaard, J, Barnes, E, Preiser, W, Van Rensburg, C, Matthews, PC

Sequencing of human genomes with nanopore technology by Bowden, R, Davies, R, Heger, A, Pagnamenta, A, De Cesare, M, Oikkonen, L, Parkes, D, Freeman, C, Dhalla, F, Patel, S, Popitsch, N, Ip, C, Roberts, H, Salatino, S, Lockstone, H, Lunter, G, Taylor, J, Buck, D, Simpson, M, Donnelly, P

Endemic HBV among hospital in-patients in Bangladesh, including evidence of occult infection. by Chowdhury, FR, McNaughton, AL, Amin, MR, Barai, L, Saha, MR, Rahman, T, Das, BC, Hasan, MR, Islam, KMS, Faiz, MA, Al-Mahtab, M, Mokaya, J, Kronsteiner, B, Jeffery, K, Andersson, MI, de Cesare, M, Ansari, MA, Dunachie, S, Matthews, PC

Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data by Mayne, R, Secret, S, Geoghegan, C, Trebes, A, Kean, K, Reid, K, Lin, G, Ansari, MA, de Cesare, M, Bonsall, D, Elliott, I, Piazza, P, Brown, A, Bray, J, Knight, JC, Harvala, H, Breuer, J, Simmonds, P, Bowden, RJ, Golubchik, T

Distinct patterns of within-host virus populations between two subgroups of human respiratory syncytial virus by Lin, G-L, Drysdale, SB, Snape, MD, O'Connor, D, Brown, A, MacIntyre-Cockett, G, Mellado-Gomez, E, de Cesare, M, Bonsall, D, Ansari, MA, Öner, D, Aerssens, J, Butler, C, Bont, L, Openshaw, P, Martinón-Torres, F, Nair, H, Bowden, R, Golubchik, T, Pollard, AJ