Alzheimer's loci: epigenetic associations and interaction with genetic factors by Chibnik, Lori B., Yu, Lei, Srivastava, Gyan, Schneider, Julie A., Kellis, Manolis, Bennett, David A., De Jager, Philip L., Eaton, Matthew Lucas

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Temporal Tracking of Microglia Activation in Neurodegeneration at Single-Cell Resolution by Hemberg, Martin, De Jager, Philip L., Ransohoff, Richard M., Mathys, Hansruedi, Adaikkan, Chinnakkaruppan, Gao, Fan, Young, Jennie Zin-Ney, Manet, Elodie, Regev, Aviv, Tsai, Li-Huei

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A high dimensional immune monitoring model of HIV-specific CD8 T cell responses accurately identifies subjects achieving spontaneous control of viral replication by Ndhlovu Zaza M, Chibnik Lori B, Proudfoot Jacqueline, Vine Seanna, McMullen Ashley, Cesa Kevin, Alvino Donna, Piechocka-Trocha Alicja, de Jager Philip L, Kaufmann Daniel E, Walker Bruce D

Automated high-dimensional flow cytometric data analysis by Pyne, Saumyadipta, Hu, Xinli, Wang, Kui, Rossin, Elizabeth, Lin, Tsung-I, Maier, Lisa M., Baecher-Allan, Clare, McLachlan, Geoffrey J., Tamayo, Pablo, Hafler, David A., De Jager, Philip L., Mesirov, Jill P.

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Regulation of Gene Expression in Autoimmune Disease Loci and the Genetic Basis of Proliferation in CD4[superscript +] Effector Memory T Cells by Hu, Xinli, Kim, Hyun, Raj, Towfique, Brennan, Patrick J., Trynka, Gosia, Teslovich, Nikola, Slowikowski, Kamil, Chen, Wei-Min, Onengut-Gumuscu, Suna, Baecher-Allan, Clare, De Jager, Philip L., Rich, Stephen S., Stranger, Barbara E., Brenner, Michael B., Raychaudhuri, Soumya

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Normalization of Plasma 25-Hydroxy Vitamin D Is Associated with Reduced Risk of Surgery in Crohn’s Disease by Ananthakrishnan, Ashwin N., Cagan, Andrew, Gainer, Vivian, Cai, Tianxi, Cheng, Su-Chun, Savova, Guergana, Chen, Pei, Szolovits, Peter, Xia, Zongqi, De Jager, Philip L., Shaw, Stanley Y., Churchill, Susanne, Karlson, Elizabeth W., Kohane, Isaac, Plenge, Robert M., Murphy, Shawn N., Liao, Katherine P.

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Psychiatric co-morbidity is associated with increased risk of surgery in Crohn's disease by Ananthakrishnan, Ashwin N., Gainer, Vivian, Perez, R. G., Cai, T., Cheng, Su-Chun, Savova, G., Chen, P., Szolovits, Peter, Xia, Z., De Jager, Philip L., Shaw, S. Y., Churchill, S., Karlson, Elizabeth W., Kohane, Isaac, Perlis, R. H., Plenge, R. M., Murphy, Shawn N., Liao, Katherine P.

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IL2RA Genetic Heterogeneity in Multiple Sclerosis and Type 1 Diabetes Susceptibility and Soluble Interleukin-2 Receptor Production by Maier, Lisa M., Lowe, Christopher E., Cooper, Jason, Downes, Kate, Anderson, David E., Severson, Christopher, Clark, Pamela M., Healy, Brian, Walker, Neil, Aubin, Cristin, Oksenberg, Jorge R., Hauser, Stephen L., Compston, Alastair, Sawcer, Stephen, De Jager, Philip L., Wicker, Linda S., Todd, John A., Hafler, David A.

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Similar Risk of Depression and Anxiety Following Surgery or Hospitalization for Crohn's Disease and Ulcerative Colitis by Ananthakrishnan, Ashwin N., Gainer, Vivian, Cai, Tianxi, Perez, Raul Guzman, Cheng, Su-Chun, Savova, Guergana, Chen, Pei, Szolovits, Peter, Xia, Zongqi, De Jager, Philip L., Shaw, Stanley, Churchill, Susanne, Karlson, Elizabeth W., Kohane, Isaac, Perlis, Roy H., Plenge, Robert M., Murphy, Shawn N., Liao, Katherine P.

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Parsing the Interferon Transcriptional Network and Its Disease Associations by Mostafavi, Sara, Yoshida, Hideyuki, Moodley, Devapregasan, LeBoité, Hugo, Rothamel, Katherine, Raj, Towfique, Ye, Chun Jimmie, Chevrier, Nicolas, Zhang, Shen-Ying, Feng, Ting, Lee, Mark, Casanova, Jean-Laurent, Clark, James D., Hegen, Martin, Telliez, Jean-Baptiste, Hacohen, Nir, De Jager, Philip L., Regev, Aviv, Mathis, Diane, Benoist, Christophe

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Epigenome-wide study uncovers large-scale changes in histone acetylation driven by tau pathology in aging and Alzheimer’s human brains by Klein, Hans-Ulrich, McCabe, Cristin, Gjoneska, Elizabeta, Sullivan, Sarah E, Kaskow, Belinda J, Tang, Anna, Smith, Robert V, Xu, Jishu, Pfenning, Andreas R, Bernstein, Bradley E, Meissner, Alexander, Schneider, Julie A, Mostafavi, Sara, Tsai, Li-Huei, Young-Pearse, Tracy L, Bennett, David A, De Jager, Philip L

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Fine-Mapping the Genetic Association of the Major Histocompatibility Complex in Multiple Sclerosis: HLA and Non-HLA Effects by Patsopoulos, Nikolaos A., Barcellos, Lisa F., Hintzen, Rogier Q., Schaefer, Catherine, van Duijn, Cornelia M., Noble, Janelle A., Raj, Towfique, Gourraud, Pierre-Antoine, Stranger, Barbara E., Oksenberg, Jorge, Olsson, Tomas, Taylor, Bruce V., Sawcer, Stephen, Hafler, David A., Carrington, Mary, De Jager, Philip L., de Bakker, Paul I. W.

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Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors by Villani, Alexandra-Chloé, Satija, Rahul, Reynolds, Gary, Sarkizova, Siranush, Shekhar, Karthik, Fletcher, James, Griesbeck, Morgane, Butler, Andrew, Zheng, Shiwei, Lazo, Suzan, Jardine, Laura, Dixon, David, Stephenson, Emily, Nilsson, Emil, Grundberg, Ida, McDonald, David, Filby, Andrew, Li, Weibo, De Jager, Philip L., Rozenblatt-Rosen, Orit, Lane, Andrew A., Haniffa, Muzlifah, Regev, Aviv, Hacohen, Nir

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Functional Links Between Aβ Toxicity, Endocytic Trafficking, and Alzheimer's Disease Risk Factors in Yeast by Shulman, J. M., Parrado, A., Lindhagen-Persson, M., Reiman, E. M., Evans, D. A., Bennett, David A., Olofsson, A., De Jager, Philip L., Tanzi, R. E., Caldwell, Kim A., Caldwell, Guy A., Lindquist, Susan, Treusch, Sebastian, Hamamichi, Shusei, Goodman, Jessica L., Matlack, Kent E. S., Chung, Chee Yeun, Baru, Valeriya, Valastyan, Julie Suzanne, Han, Haesun, Lindquist, Susan, Bevis, Brooke J.

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Modeling Disease Severity in Multiple Sclerosis Using Electronic Health Records by Xia, Zongqi, Secor, Elizabeth, Chibnik, Lori B., Bove, Riley M., Cheng, Suchun, Chitnis, Tanuja, Cagan, Andrew, Gainer, Vivian, Chen, Pei, Liao, Katherine P., Shaw, Stanley Y., Ananthakrishnan, Ashwin N., Szolovits, Peter, Weiner, Howard L., Karlson, Elizabeth W., Murphy, Shawn N., Savova, Guergana K., Cai, Tianxi, Churchill, Susanne, Plenge, Robert M., Kohane, Isaac, De Jager, Philip L.

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Common Genetic Variants Modulate Pathogen-Sensing Responses in Human Dendritic Cells by Lee, M. N., Ye, C., Villani, A.-C., Raj, T., Li, W., Eisenhaure, Thomas, Imboywa, S. H., Chipendo, P. I., Slowikowski, K., Raddassi, K., McCabe, C., Lee, M. H., Frohlich, I. Y., Raychaudhuri, S., Stranger, B. E., Benoist, Christophe, De Jager, Philip L., Hacohen, Nir, Ran, F. Ann, Zhang, Feng, Regev, Aviv, Hafler, David A., Ward, Lucas D., Kellis, Manolis

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The Parkinson’s disease protein alpha-synuclein is a modulator of processing bodies and mRNA stability by Hallacli, Erinc, Kayatekin, Can, Nazeen, Sumaiya, Wang, Xiou H, Sheinkopf, Zoe, Sathyakumar, Shubhangi, Sarkar, Souvarish, Jiang, Xin, Dong, Xianjun, Di Maio, Roberto, Wang, Wen, Keeney, Matthew T, Felsky, Daniel, Sandoe, Jackson, Vahdatshoar, Aazam, Udeshi, Namrata D, Mani, DR, Carr, Steven A, Lindquist, Susan, De Jager, Philip L, Bartel, David P, Myers, Chad L, Greenamyre, J Timothy, Feany, Mel B, Sunyaev, Shamil R, Chung, Chee Yeun, Khurana, Vikram

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Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer’s disease by Olah, Marta, Menon, Vilas, Habib, Naomi, Taga, Mariko F, Ma, Yiyi, Yung, Christina J, Cimpean, Maria, Khairallah, Anthony, Coronas-Samano, Guillermo, Sankowski, Roman, Grün, Dominic, Kroshilina, Alexandra A, Dionne, Danielle, Sarkis, Rani A, Cosgrove, Garth R, Helgager, Jeffrey, Golden, Jeffrey A, Pennell, Page B, Prinz, Marco, Vonsattel, Jean Paul G, Teich, Andrew F, Schneider, Julie A, Bennett, David A, Regev, Aviv, Elyaman, Wassim, Bradshaw, Elizabeth M, De Jager, Philip L

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Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci by Srivastava, Gyan, Lunnon, Katie, Burgess, Jeremy, Yu, Lei, Ernst, Jason, McCabe, Cristin, Tang, Anna, Raj, Towfique, Replogle, Joseph, Brodeur, Wendy, Gabriel, Stacey, Younkin, Curtis, Zou, Fanggeng, Szyf, Moshe, Meissner, Alexander, Ertekin-Taner, Nilufer, Kellis, Manolis, Mill, Jonathan, De Jager, Philip L., Schalkwyk, Leonard C., Eaton, Matthew Lucas, Eaton, Matthew L., Keenan, Brendan T., Ernst, Jason, Chai, High S., Younkin, Steven G., Epstein, Charles B., Schneider, Julie A., Bernstein, Bradley E., Chibnik, Lori B., Bennett, David A.

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The role of the CD[subscript 5]8 locus in multiple sclerosis by De Jager, Philip L., Baecher-Allan, Clare, Maier, Lisa M., Arthur, Ariel T., Ottoboni, Linda, Barcellos, Lisa F., McCauley, Jacob L., Sawcer, Stephen, Goris, An, Saarela, Janna, Yelensky, Roman, Price, Alkes, Leppa, Virpi, Patterson, Nick, de Bakker, Paul I. W., Tran, Dong, Aubin, Cristin, Pobywajlo, Susan, Rossin, Elizabeth, Hu, Xinli, Ashley, Charles W., Choy, Edwin, Rioux, John D., Pericak-Vance, Margaret A., Ivinson, Adrian, Booth, David R., Stewart, Graeme J., Palotie, Aarno, Peltonen, Leena, Dubois, Benedicte, Haines, Jonathan L., Weiner, Howard L., Compston, Alastair, Hauser, Stephen L., Daly, Mark J., Reich, David, Oksenberg, Jorge R., Hafler, David A.

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