SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference. di Paraskevis, D, Deforche, K, Lemey, P, Magiorkinis, G, Hatzakis, A, Vandamme, A

Possible footprints of APOBEC3F and/or other APOBEC3 deaminases, but not APOBEC3G, on HIV-1 from patients with acute/early and chronic infections. di Armitage, A, Deforche, K, Welch, J, Van Laethem, K, Camacho, R, Rambaut, A, Iversen, A

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools. di Pineda-Peña, A, Faria, N, Imbrechts, S, Libin, P, Abecasis, AB, Deforche, K, Gómez-López, A, Camacho, R, de Oliveira, T, Vandamme, A

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences. di Alcantara, L, Cassol, S, Libin, P, Deforche, K, Pybus, O, Van Ranst, M, Galvão-Castro, B, Vandamme, A, Vandamme, A, de Oliveira, T

APOBEC3G-induced hypermutation of human immunodeficiency virus type-1 is typically a discrete "all or nothing" phenomenon di Armitage, A, Deforche, K, Chang, C, Wee, E, Kramer, B, Welch, J, Gerstoft, J, Fugger, L, McMichael, A, Rambaut, A, Iversen, A

Treatment-associated polymorphisms in protease are significantly associated with higher viral load and lower CD4 count in newly diagnosed drug-naive HIV-1 infected patients. di Theys, K, Deforche, K, Vercauteren, J, Libin, P, van de Vijver, D, Albert, J, Asjö, B, Balotta, C, Bruckova, M, Camacho, R, Clotet, B, Coughlan, S, Grossman, Z, Hamouda, O, Horban, A, Korn, K, Kostrikis, L, Kücherer, C, Nielsen, C, Paraskevis, D, Poljak, M, Puchhammer-Stockl, E, Riva, C, Ruiz, L, Liitsola, K