A natural encoding of genetic variation in a Burrows-Wheeler Transform to enable mapping and genome inference par Iqbal, Z, Maciuca, S, del Ojo Elias, C, McVean, G

A natural encoding of genetic variation in a Burrows-Wheeler Transform to enable mapping and genome inference par Iqbal, Z, Maciuca, S, del Ojo Elias, C, McVean, G

Whole-genome sequencing demonstrates that fidaxomicin is superior to vancomycin for preventing reinfection and relapse of infection with Clostridium difficile par Eyre, D, Babakhani, F, Griffiths, D, Seddon, J, Del Ojo Elias, C, Gorbach, S, Peto, T, Crook, D, Walker, A

Development of nanopore-based whole genome sequencing to allow Mycobacterium diagnosis directly from patient samples par Pankhurst, L, Bradley, P, Votintseva, A, del Ojo Elias, C, Sanderson, N, Morgan, M, Walker, A, Peto, T, Crook, D, Iqbal, Z

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data. par Stoesser, N, Batty, E, Eyre, D, Morgan, M, Wyllie, D, Del Ojo Elias, C, Johnson, JR, Walker, A, Peto, T, Crook, D

Colonization with Enterobacteriaceae producing ESBLs in children attending pre-school childcare facilities in the Lao People's Democratic Republic. par Stoesser, N, Xayaheuang, S, Vongsouvath, M, Phommasone, K, Elliott, I, Del Ojo Elias, C, Crook, D, Newton, P, Buisson, Y, Lee, S, Dance, D

Mycobacterial DNA extraction for whole-genome sequencing from early positive liquid (MGIT) cultures par Votintseva, A, Pankhurst, L, Anson, L, Morgan, MR, Gascoyne-Binzi, D, Walker, T, Quan, T, Wyllie, D, Del Ojo Elias, C, Wilcox, M, Walker, A, Peto, T, Crook, D

Evaluation of whole genome sequencing for Mycobacterial species identification and drug susceptibility testing in a clinical setting: a large-scale prospective assessment of perfor... par Quan, T, Bawa, Z, Foster, D, Walker, T, Del Ojo Elias, C, Rathod, P, MMM Informatics Group, Iqbal, Z, Bradley, P, Mowbray, J, Walker, A, Crook, D, Wyllie, D, Peto, T, Smith, E

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples par Votintseva, A, Bradley, P, Pankhurst, L, del Ojo Elias, C, Loose, M, Nilgiriwala, K, Chatterjee, A, Smith, E, Sanderson, N, Walker, T, Morgan, M, Wyllie, D, Walker, A, Peto, T, Crook, D, Iqbal, Z

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples par Iqbal, Z, Votintseva, A, Bradley, P, Pankhurst, L, del Ojo Elias, C, Loose, M, Nilgiriwala, K, Chatterjee, A, Smith, E, Sanderson, N, Walker, T, Morgan, M, Wyllie, D, Walker, A, Peto, T, Crook, D

Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study par Pankhurst, L, Fermont, J, del Ojo Elias, C, Votintseva, A, Walker, T, Cole, K, Davies, J, Gascoyne-Binzi, D, Kohl, T, Kong, C, Lemaitre, N, Niemann, S, Paul, J, Rogers, T, Roycroft, E, Smith, E, Supply, P, Tang, P, Wilcox, M

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study. par Walker, T, Kohl, T, Omar, S, Hedge, J, Del Ojo Elias, C, Bradley, P, Iqbal, Z, Feuerriegel, S, Niehaus, K, Wilson, D, Clifton, D, Kapatai, G, Ip, C, Bowden, R, Drobniewski, F, Allix-Béguec, C, Gaudin, C, Parkhill, J, Diel, R, Supply, P, Crook, D, Smith, E, Walker, A, Ismail, N, Niemann, S, Peto, T

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: An observational study par Walker, T, Golubchik, T, Giess, A, Del Ojo Elias, C, Walker, A, Crook, D, Peto, T, Conlon, C, Morgan, M, Jeffery, K, Bowler, I, Lalor, M, Anderson, L, Abubakar, I, Thomas, H, Broda, A, Drobniewski, F, Ortega, L, McCarthy, N, Parker, L, Churchill, S, Bennett, K, Laurenson, I, Barrett, A, Monk, P

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study. par Walker, T, Lalor, M, Broda, A, Saldana Ortega, L, Morgan, M, Parker, L, Churchill, S, Bennett, K, Golubchik, T, Giess, A, Del Ojo Elias, C, Jeffery, K, Bowler, I, Laurenson, I, Barrett, A, Drobniewski, F, McCarthy, N, Anderson, L, Abubakar, I, Thomas, H, Monk, P, Smith, E, Walker, A, Crook, D, Peto, T, Conlon, C

Insidious risk of severe Mycobacterium chimaera infection in cardiac surgery patients. par Chand, M, Lamagni, T, Kranzer, K, Hedge, J, Moore, G, Parks, S, Collins, S, Del Ojo Elias, C, Ahmed, N, Brown, T, Smith, E, Hoffman, P, Kirwan, P, Mason, B, Smith-Palmer, A, Veal, P, Lalor, M, Bennett, A, Walker, J, Yeap, A, Isidro Carrion Martin, A, Dolan, G, Bhatt, S, Skingsley, A, Charlett, A, Pearce, D, Russell, K, Kendall, S, Klein, A, Robins, S, Schelenz, S, Newsholme, W, Thomas, S, Collyns, T, Davies, E, McMenamin, J, Doherty, L, Peto, T, Crook, D, Zambon, M, Phin, N