Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments by Jeffrey A. Thompson, Devin C. Koestler

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Simulating time-to-event data under the Cox proportional hazards model: assessing the performance of the non-parametric Flexible Hazards Method by Jennifer L. Delzeit, Devin C. Koestler

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pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS) by Stefan Graw, Rosalyn Henn, Jeffrey A. Thompson, Devin C. Koestler

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A Novel Framework for the Identification of Reference DNA Methylation Libraries for Reference-Based Deconvolution of Cellular Mixtures by Shelby Bell-Glenn, Jeffrey A. Thompson, Lucas A. Salas, Devin C. Koestler

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Comprehensive exploration of JQ1 and GSK2801 targets in breast cancer using network pharmacology and molecular modeling approaches by Nanda Kumar Yellapu, Dong Pei, Emily Nissen, Jeffrey A. Thompson, Devin C. Koestler

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HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylati... by Ze Zhang, John K. Wiencke, Karl T. Kelsey, Devin C. Koestler, Brock C. Christensen, Lucas A. Salas

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Integrative epigenetic and genetic pan-cancer somatic alteration portraits by Lucas A. Salas, Kevin C. Johnson, Devin C. Koestler, Dylan E. O'Sullivan, Brock C. Christensen

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Subject level clustering using a negative binomial model for small transcriptomic studies by Qian Li, Janelle R. Noel-MacDonnell, Devin C. Koestler, Ellen L. Goode, Brooke L. Fridley

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Absence of an embryonic stem cell DNA methylation signature in human cancer by Ze Zhang, John K. Wiencke, Devin C. Koestler, Lucas A. Salas, Brock C. Christensen, Karl T. Kelsey

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DNA methylation ageing clocks and pancreatic cancer risk: pooled analysis of three prospective nested case-control studies by Mei Chung, Mengyuan Ruan, Naisi Zhao, Devin C. Koestler, Immaculata De Vivo, Karl T. Kelsey, Dominique S. Michaud

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Placental FKBP5 genetic and epigenetic variation is associated with infant neurobehavioral outcomes in the RICHS cohort. by Alison G Paquette, Barry M Lester, Devin C Koestler, Corina Lesseur, David A Armstrong, Carmen J Marsit

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A novel Bayesian adaptive design incorporating both primary and secondary endpoints for randomized IIB chemoprevention study of women at increased risk for breast cancer by Byron J. Gajewski, Bruce F. Kimler, Devin C. Koestler, Dinesh Pal Mudaranthakam, Kate Young, Carol J. Fabian

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Epigenome-wide scan identifies differentially methylated regions for lung cancer using pre-diagnostic peripheral blood by Naisi Zhao, Mengyuan Ruan, Devin C. Koestler, Jiayun Lu, Carmen J. Marsit, Karl T. Kelsey, Elizabeth A. Platz, Dominique S. Michaud

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Identification of a foetal epigenetic compartment in adult human kidney by John K. Wiencke, Ze Zhang, Devin C. Koestler, Lucas A. Salas, Annette M. Molinaro, Brock C. Christensen, Karl T. Kelsey

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Synergistic anti-proliferative activity of JQ1 and GSK2801 in triple-negative breast cancer by Nanda Kumar Yellapu, Thuc Ly, Mihaela E. Sardiu, Dong Pei, Danny R. Welch, Jeffery A. Thompson, Devin C. Koestler

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An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray by Lucas A. Salas, Devin C. Koestler, Rondi A. Butler, Helen M. Hansen, John K. Wiencke, Karl T. Kelsey, Brock C. Christensen

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Variation in DNA methylation of human blood over a 1-year period using the Illumina MethylationEPIC array by Ina Zaimi, Dong Pei, Devin C. Koestler, Carmen J. Marsit, Immaculata De Vivo, Shelley S. Tworoger, Alexandra E. Shields, Karl T. Kelsey, Dominique S. Michaud

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Assessing equivalent and inverse change in genes between diverse experiments by Lisa Neums, Lisa Neums, Devin C. Koestler, Devin C. Koestler, Qing Xia, Qing Xia, Jinxiang Hu, Jinxiang Hu, Shachi Patel, Shachi Patel, Shelby Bell-Glenn, Shelby Bell-Glenn, Dong Pei, Dong Pei, Bo Zhang, Samuel Boyd, Samuel Boyd, Prabhakar Chalise, Prabhakar Chalise, Jeffrey A. Thompson, Jeffrey A. Thompson

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The aquaglyceroporin AQP9 contributes to the sex-specific effects of in utero arsenic exposure on placental gene expression by Emily F. Winterbottom, Devin C. Koestler, Dennis Liang Fei, Eric Wika, Anthony J. Capobianco, Carmen J. Marsit, Margaret R. Karagas, David J. Robbins

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Improving the efficiency of clinical trials by standardizing processes for Investigator Initiated Trials by Dinesh Pal Mudaranthakam, Milind A. Phadnis, Ron Krebill, Lauren Clark, Jo A. Wick, Jeffrey Thompson, John Keighley, Byron J. Gajewski, Devin C. Koestler, Matthew S. Mayo

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