CrossDome: an interactive R package to predict cross-reactivity risk using immunopeptidomics databases by Andre F. Fonseca, Dinler A. Antunes

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Editorial: Structural modeling and computational analyses of immune system molecules by Dinler A. Antunes, Clara T. Schoeder, Minkyung Baek, Eduardo A. Donadi

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Large-Scale Structure-Based Prediction of Stable Peptide Binding to Class I HLAs Using Random Forests by Jayvee R. Abella, Dinler A. Antunes, Cecilia Clementi, Cecilia Clementi, Lydia E. Kavraki

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Editorial: Advances in mathematical and computational oncology, volume III by George Bebis, Mamoru Kato, Mohammad Kohandel, Kathleen Wilkie, Dinler A. Antunes, Ken Chen, Jinzhuang Dou

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Editorial: Quantification and prediction of T-cell cross-reactivity through experimental and computational methods by Dinler A. Antunes, Brian M. Baker, Markus Cornberg, Markus Cornberg, Markus Cornberg, Liisa K. Selin

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PepSim: T-cell cross-reactivity prediction via comparison of peptide sequence and peptide-HLA structure by Sarah Hall-Swan, Jared Slone, Mauricio M. Rigo, Dinler A. Antunes, Gregory Lizée, Lydia E. Kavraki

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Using parallelized incremental meta-docking can solve the conformational sampling issue when docking large ligands to proteins by Didier Devaurs, Dinler A Antunes, Sarah Hall-Swan, Nicole Mitchell, Mark Moll, Gregory Lizée, Lydia E Kavraki

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Individual Epitope-Specific CD8⁺ T Cell Immune Responses Are Shaped Differently during Chronic Viral Infection by Sebastian Klein, Jasmin Mischke, Finn Beruldsen, Immo Prinz, Dinler A. Antunes, Markus Cornberg, Anke R. M. Kraft

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Interpreting T-Cell Cross-reactivity through Structure: Implications for TCR-Based Cancer Immunotherapy by Dinler A. Antunes, Dinler A. Antunes, Maurício M. Rigo, Maurício M. Rigo, Martiela V. Freitas, Marcus F. A. Mendes, Marialva Sinigaglia, Gregory Lizée, Lydia E. Kavraki, Liisa K. Selin, Markus Cornberg, Markus Cornberg, Gustavo F. Vieira, Gustavo F. Vieira

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Structural allele-specific patterns adopted by epitopes in the MHC-I cleft and reconstruction of MHC:peptide complexes to cross-reactivity assessment. by Dinler A Antunes, Gustavo F Vieira, Maurício M Rigo, Samuel P Cibulski, Marialva Sinigaglia, José A B Chies

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Structural Modeling and Molecular Dynamics of the Immune Checkpoint Molecule HLA-G by Thais Arns, Dinler A. Antunes, Jayvee R. Abella, Maurício M. Rigo, Lydia E. Kavraki, Silvana Giuliatti, Eduardo A. Donadi

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New insights into the in silico prediction of HIV protease resistance to nelfinavir. by Dinler A Antunes, Maurício M Rigo, Marialva Sinigaglia, Rúbia M de Medeiros, Dennis M Junqueira, Sabrina E M Almeida, Gustavo F Vieira

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Current progress and open challenges for applying deep learning across the biosciences by Nicolae Sapoval, Amirali Aghazadeh, Michael G. Nute, Dinler A. Antunes, Advait Balaji, Richard Baraniuk, C. J. Barberan, Ruth Dannenfelser, Chen Dun, Mohammadamin Edrisi, R. A. Leo Elworth, Bryce Kille, Anastasios Kyrillidis, Luay Nakhleh, Cameron R. Wolfe, Zhi Yan, Vicky Yao, Todd J. Treangen

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Comprehensive characterization of IFNγ signaling in acute myeloid leukemia reveals prognostic and therapeutic strategies by Bofei Wang, Patrick K. Reville, Mhd Yousuf Yassouf, Fatima Z. Jelloul, Christopher Ly, Poonam N. Desai, Zhe Wang, Pamella Borges, Ivo Veletic, Enes Dasdemir, Jared K. Burks, Guilin Tang, Shengnan Guo, Araceli Isabella Garza, Cedric Nasnas, Nicole R. Vaughn, Natalia Baran, Qing Deng, Jairo Matthews, Preethi H. Gunaratne, Dinler A. Antunes, Suhendan Ekmekcioglu, Koji Sasaki, Miriam B. Garcia, Branko Cuglievan, Dapeng Hao, Naval Daver, Michael R. Green, Marina Konopleva, Andrew Futreal, Sean M. Post, Hussein A. Abbas

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