Changes in Blood Metabolites, Intestinal Microbiota Composition and Gene Expression of 95 Weeks Old Laying Hens Differing in Egg Production and Egg Breaking Strength by Dirkjan Schokker, Jeroen Visscher, Henri Woelders

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Persistence of functional microbiota composition across generations by Christian Ramos, Mario Calus, Dirkjan Schokker

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Plasticity of intestinal gene expression profile signatures reflected by nutritional interventions in piglets by Dirkjan Schokker, Ina Hulsegge, Henri Woelders, Johanna M. J. Rebel

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Building pathway graphs from BioPAX data in R [version 1; referees: 1 approved, 2 approved with reservations] by Nirupama Benis, Dirkjan Schokker, Frank Kramer, Mari A. Smits, Maria Suarez-Diez

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An observational study of the presence and variability of the microbiota composition of goat herd milk related to mainstream and artisanal farm management by Rita A. H. Hoving-Bolink, Adriaan F. G. Antonis, Marinus F. W. te Pas, Dirkjan Schokker

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Dietary supplementation of zinc oxide modulates intestinal functionality during the post-weaning period in clinically healthy piglets by Dirkjan Schokker, Soumya K. Kar, Els Willems, Alex Bossers, Ruud A. Dekker, Alfons J. M. Jansman

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An observational study of the presence and variability of the microbiota composition of goat herd milk related to mainstream and artisanal farm management. by Rita A H Hoving-Bolink, Adriaan F G Antonis, Marinus F W Te Pas, Dirkjan Schokker

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The Effect of a <i>Bacillus</i> Probiotic and Essential Oils Compared to an Ionophore on the Rumen Microbiome Composition of Feedlot Cattle by Dina A. Linde, Dirkjan Schokker, Cornelius J. L. du Toit, Gopika D. Ramkilawon, Este van Marle-Köster

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Continuous real-time cow identification by reading ear tags from live-stream video by John W.M. Bastiaansen, Ina Hulsegge, Dirkjan Schokker, Esther D. Ellen, Bert Klandermans, Marjaneh Taghavi, Claudia Kamphuis

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Enrichment of in vivo transcription data from dietary intervention studies with in vitro data provides improved insight into gene regulation mechanisms in the intestinal mucosa by Marcel Hulst, Alfons Jansman, Ilonka Wijers, Arjan Hoekman, Stéphanie Vastenhouw, Marinus van Krimpen, Mari Smits, Dirkjan Schokker

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Local intestinal microbiota response and systemic effects of feeding black soldier fly larvae to replace soybean meal in growing pigs by Soumya K. Kar, Dirkjan Schokker, Amy C. Harms, Leo Kruijt, Mari A. Smits, Alfons J. M. Jansman

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Environmentally enriched housing conditions affect pig welfare, immune system and gut microbiota in early life by Caifang Wen, Ingrid van Dixhoorn, Dirkjan Schokker, Henri Woelders, Norbert Stockhofe-Zurwieden, Johanna M. J. Rebel, Hauke Smidt

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Early life environment affects behavior, welfare, gut microbiome composition, and diversity in broiler chickens by Ingrid C. de Jong, Dirkjan Schokker, Henk Gunnink, Maudia van Wijhe, Johanna M. J. Rebel, Johanna M. J. Rebel

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Sanitary Conditions on the Farm Alters Fecal Metabolite Profile in Growing Pigs by Soumya K. Kar, Marinus F. W. te Pas, Leo Kruijt, Jacques J. M. Vervoort, Alfons J. M. Jansman, Dirkjan Schokker

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Sanitary Conditions Affect the Colonic Microbiome and the Colonic and Systemic Metabolome of Female Pigs by Marinus F. W. te Pas, Alfons J. M. Jansman, Leo Kruijt, Yvonne van der Meer, Jacques J. M. Vervoort, Dirkjan Schokker

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Neonatal and maternal dietary interventions driving microbiota and functionality in piglet gut compartments by Dirkjan Schokker, Mariëlle H. van den Esker, Alex Bossers, Janneke G. Allaart, Hubèrt van Hees, Astrid de Greeff, Johanna M. J. Rebel

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Diet-induced changes in the jejunal microbiota of developing broilers reduce the abundance of Enterococcus hirae and Enterococcus faecium by Paul B. Stege, Dirkjan Schokker, Frank Harders, Soumya K. Kar, Norbert Stockhofe, Vera Perricone, Johanna M. J. Rebel, Ingrid C. de Jong, Alex Bossers

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High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis by Nirupama Benis, Jerry M. Wells, Mari A. Smits, Soumya Kanti Kar, Bart van der Hee, Vitor A. P. Martins dos Santos, Maria Suarez-Diez, Dirkjan Schokker

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Dietary strategies can increase cloacal endotoxin levels and modulate the resident microbiota in broiler chickens by Vera Perricone, Dirkjan Schokker, Alex Bossers, Anne de Bruijn, Soumya K. Kar, Marinus F.W. te Pas, Johanna M.J. Rebel, Inge M. Wouters, Ingrid C. de Jong

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Multi-Level Integration of Environmentally Perturbed Internal Phenotypes Reveals Key Points of Connectivity between Them by Nirupama Benis, Soumya K. Kar, Vitor A. P. Martins dos Santos, Vitor A. P. Martins dos Santos, Mari A. Smits, Mari A. Smits, Dirkjan Schokker, Maria Suarez-Diez

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