General rules for optimal codon choice. by Ruth Hershberg, Dmitri A Petrov

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Evidence that mutation is universally biased towards AT in bacteria. by Ruth Hershberg, Dmitri A Petrov

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On the limitations of using ribosomal genes as references for the study of codon usage: a rebuttal. by Ruth Hershberg, Dmitri A Petrov

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Preferential duplication of conserved proteins in eukaryotic genomes. by Jerel C Davis, Dmitri A Petrov

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Evidence that adaptation in Drosophila is not limited by mutation at single sites. by Talia Karasov, Philipp W Messer, Dmitri A Petrov

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Fitness variation across subtle environmental perturbations reveals local modularity and global pleiotropy of adaptation by Grant Kinsler, Kerry Geiler-Samerotte, Dmitri A Petrov

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Extremely Rare Polymorphisms in Saccharomyces cerevisiae Allow Inference of the Mutational Spectrum. by Yuan O Zhu, Gavin Sherlock, Dmitri A Petrov

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The clarifying role of time series data in the population genetics of HIV. by Alison F Feder, Pleuni S Pennings, Dmitri A Petrov

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Pervasive natural selection in the Drosophila genome? by Guy Sella, Dmitri A Petrov, Molly Przeworski, Peter Andolfatto

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Viruses are a dominant driver of protein adaptation in mammals by David Enard, Le Cai, Carina Gwennap, Dmitri A Petrov

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LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data. by Alison F Feder, Dmitri A Petrov, Alan O Bergland

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Strong purifying selection at synonymous sites in D. melanogaster. by David S Lawrie, Philipp W Messer, Ruth Hershberg, Dmitri A Petrov

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Evolutionary Dynamics in Structured Populations Under Strong Population Genetic Forces by Alison F. Feder, Pleuni S. Pennings, Joachim Hermisson, Dmitri A. Petrov

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Historical trends and new surveillance of Plasmodium falciparum drug resistance markers in Angola by Emily R. Ebel, Fátima Reis, Dmitri A. Petrov, Sandra Beleza

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Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster. by Yuan Zhu, Alan O Bergland, Josefa González, Dmitri A Petrov

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Functional biology in its natural context: A search for emergent simplicity by Joy Bergelson, Martin Kreitman, Dmitri A Petrov, Alvaro Sanchez, Mikhail Tikhonov

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Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila. by Josefa González, Talia L Karasov, Philipp W Messer, Dmitri A Petrov

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High rate of recent transposable element-induced adaptation in Drosophila melanogaster. by Josefa González, Kapa Lenkov, Mikhail Lipatov, J Michael Macpherson, Dmitri A Petrov

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Host species and environmental effects on bacterial communities associated with Drosophila in the laboratory and in the natural environment. by Fabian Staubach, John F Baines, Sven Künzel, Elisabeth M Bik, Dmitri A Petrov

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Most cancers carry a substantial deleterious load due to Hill-Robertson interference by Susanne Tilk, Svyatoslav Tkachenko, Christina Curtis, Dmitri A Petrov, Christopher D McFarland

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