Prioritisation and network analysis of Crohn's disease susceptibility genes. by Daniele Muraro, Douglas A Lauffenburger, Alison Simmons

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Inference of drug off-target effects on cellular signaling using interactome-based deep learning by Nikolaos Meimetis, Douglas A. Lauffenburger, Avlant Nilsson

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Acidic extracellular pH promotes activation of integrin α(v)β(3). by Ranjani K Paradise, Douglas A Lauffenburger, Krystyn J Van Vliet

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Collateral responses to classical cytotoxic chemotherapies are heterogeneous and sensitivities are sparse by Simona Dalin, Beatrice Grauman-Boss, Douglas A. Lauffenburger, Michael T. Hemann

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Modeling HER2 effects on cell behavior from mass spectrometry phosphotyrosine data. by Neil Kumar, Alejandro Wolf-Yadlin, Forest M White, Douglas A Lauffenburger

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Artificial neural networks enable genome-scale simulations of intracellular signaling by Avlant Nilsson, Joshua M. Peters, Nikolaos Meimetis, Bryan Bryson, Douglas A. Lauffenburger

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Training signaling pathway maps to biochemical data with constrained fuzzy logic: quantitative analysis of liver cell responses to inflammatory stimuli. by Melody K Morris, Julio Saez-Rodriguez, David C Clarke, Peter K Sorger, Douglas A Lauffenburger

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Fuzzy logic analysis of kinase pathway crosstalk in TNF/EGF/insulin-induced signaling. by Bree B Aldridge, Julio Saez-Rodriguez, Jeremy L Muhlich, Peter K Sorger, Douglas A Lauffenburger

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Modeling a snap-action, variable-delay switch controlling extrinsic cell death. by John G Albeck, John M Burke, Sabrina L Spencer, Douglas A Lauffenburger, Peter K Sorger

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Multiplexed relative and absolute quantitative immunopeptidomics reveals MHC I repertoire alterations induced by CDK4/6 inhibition by Lauren E. Stopfer, Joshua M. Mesfin, Brian A. Joughin, Douglas A. Lauffenburger, Forest M. White

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MCAM: multiple clustering analysis methodology for deriving hypotheses and insights from high-throughput proteomic datasets. by Kristen M Naegle, Roy E Welsch, Michael B Yaffe, Forest M White, Douglas A Lauffenburger

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Profiling of metalloprotease activities in cerebrospinal fluids of patients with neoplastic meningitis by Catharina Conrad, Kristina Dorzweiler, Miles A. Miller, Douglas A. Lauffenburger, Herwig Strik, Jörg W. Bartsch

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Correction: Multi-Scale In Vivo Systems Analysis Reveals the Influence of Immune Cells on TNF-α-Induced Apoptosis in the Intestinal Epithelium. by Ken S. Lau, Virna Cortez-Retamozo, Sarah R. Philips, Mikael J. Pittet, Douglas A. Lauffenburger, Kevin M. Haigis

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AutoTransOP: translating omics signatures without orthologue requirements using deep learning by Nikolaos Meimetis, Krista M. Pullen, Daniel Y. Zhu, Avlant Nilsson, Trong Nghia Hoang, Sara Magliacane, Douglas A. Lauffenburger

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Analysis of Single-Cell RNA-Seq Identifies Cell-Cell Communication Associated with Tumor Characteristics by Manu P. Kumar, Jinyan Du, Georgia Lagoudas, Yang Jiao, Andrew Sawyer, Daryl C. Drummond, Douglas A. Lauffenburger, Andreas Raue

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Computational Interspecies Translation Between Alzheimer’s Disease Mouse Models and Human Subjects Identifies Innate Immune Complement, TYROBP, and TAM Receptor Agonist Signatures,... by Meelim J. Lee, Chuangqi Wang, Molly J. Carroll, Douglas K. Brubaker, Douglas K. Brubaker, Bradley T. Hyman, Douglas A. Lauffenburger

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In vivo microscopy reveals macrophage polarization locally promotes coherent microtubule dynamics in migrating cancer cells by Gaurav Luthria, Ran Li, Stephanie Wang, Mark Prytyskach, Rainer H. Kohler, Douglas A. Lauffenburger, Timothy J. Mitchison, Ralph Weissleder, Miles A. Miller

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Differences in HPV-specific antibody Fc-effector functions following Gardasil® and Cervarix® vaccination by Vicky Roy, Wonyeong Jung, Caitlyn Linde, Emily Coates, Julie Ledgerwood, Pamela Costner, Galina Yamshchikov, Hendrik Streeck, Boris Juelg, Douglas A. Lauffenburger, Galit Alter

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Linking proteomic and transcriptional data through the interactome and epigenome reveals a map of oncogene-induced signaling. by Shao-shan Carol Huang, David C Clarke, Sara J C Gosline, Adam Labadorf, Candace R Chouinard, William Gordon, Douglas A Lauffenburger, Ernest Fraenkel

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Borrelia-specific antibody profiles and complement deposition in joint fluid distinguish antibiotic-refractory from -responsive Lyme arthritis by Kathryn A. Bowman, Christine D. Wiggins, Elizabeth DeRiso, Steffan Paul, Klemen Strle, John A. Branda, Allen C. Steere, Douglas A. Lauffenburger, Galit Alter

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