Phage-plasmids promote recombination and emergence of phages and plasmids by Eugen Pfeifer, Eduardo P. C. Rocha

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Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes. by Todd J Treangen, Eduardo P C Rocha

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Latent evolution of biofilm formation depends on life-history and genetic background by Amandine Nucci, Eduardo P. C. Rocha, Olaya Rendueles

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Adaptation to novel spatially-structured environments is driven by the capsule and alters virulence-associated traits by Amandine Nucci, Eduardo P. C. Rocha, Olaya Rendueles

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Structural and Genomic Evolution of RRNPPA Systems and Their Pheromone Signaling by Alonso Felipe-Ruiz, Alberto Marina, Eduardo P. C. Rocha

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Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae. by Matthieu Haudiquet, Amandine Buffet, Olaya Rendueles, Eduardo P C Rocha

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MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems. by Sophie S Abby, Bertrand Néron, Hervé Ménager, Marie Touchon, Eduardo P C Rocha

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IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella by Bertrand Néron, Eloi Littner, Matthieu Haudiquet, Amandine Perrin, Jean Cury, Eduardo P. C. Rocha

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Evo‐Scope: Fully automated assessment of correlated evolution on phylogenetic trees by Maxime Godfroid, Charles Coluzzi, Amaury Lambert, Philippe Glaser, Eduardo P. C. Rocha, Guillaume Achaz

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Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts by Bogna J. Smug, Krzysztof Szczepaniak, Eduardo P. C. Rocha, Stanislaw Dunin-Horkawicz, Rafał J. Mostowy

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Capsules and their traits shape phage susceptibility and plasmid conjugation efficiency by Matthieu Haudiquet, Julie Le Bris, Amandine Nucci, Rémy A. Bonnin, Pilar Domingo-Calap, Eduardo P. C. Rocha, Olaya Rendueles

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Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages by Rubén Barcia-Cruz, David Goudenège, Jorge A. Moura de Sousa, Damien Piel, Martial Marbouty, Eduardo P. C. Rocha, Frédérique Le Roux

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Belt and braces: Two escape ways to maintain the cassette reservoir of large chromosomal integrons. by Egill Richard, Baptiste Darracq, Eloi Littner, Gael A Millot, Valentin Conte, Thomas Cokelaer, Jan Engelstädter, Eduardo P C Rocha, Didier Mazel, Céline Loot

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Tail assembly interference is a common strategy in bacterial antiviral defenses by Lingchen He, Laura Miguel-Romero, Jonasz B. Patkowski, Nasser Alqurainy, Eduardo P. C. Rocha, Tiago R. D. Costa, Alfred Fillol-Salom, José R. Penadés

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A plasmid-chromosome crosstalk in multidrug resistant enterobacteria by Laura Toribio-Celestino, Alicia Calvo-Villamañán, Cristina Herencias, Aida Alonso-del Valle, Jorge Sastre-Dominguez, Susana Quesada, Didier Mazel, Eduardo P. C. Rocha, Ariadna Fernández-Calvet, Alvaro San Millan

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Assembly of a unique membrane complex in type VI secretion systems of Bacteroidota by Thibault R. Bongiovanni, Casey J. Latario, Youn Le Cras, Evan Trus, Sophie Robitaille, Kerry Swartz, Danica Schmidtke, Maxence Vincent, Artemis Kosta, Jan Orth, Florian Stengel, Riccardo Pellarin, Eduardo P. C. Rocha, Benjamin D. Ross, Eric Durand

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Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases by Camille d’Humières, Margot Delavy, Laurie Alla, Farid Ichou, Emilie Gauliard, Amine Ghozlane, Florence Levenez, Nathalie Galleron, Benoit Quinquis, Nicolas Pons, Jimmy Mullaert, Antoine Bridier-Nahmias, Bénédicte Condamine, Marie Touchon, Dominique Rainteau, Antonin Lamazière, Philippe Lesnik, Maharajah Ponnaiah, Marie Lhomme, Natacha Sertour, Savannah Devente, Jean-Denis Docquier, Marie-Elisabeth Bougnoux, Olivier Tenaillon, Mélanie Magnan, Etienne Ruppé, Nathalie Grall, Xavier Duval, Dusko Ehrlich, France Mentré, Erick Denamur, Eduardo P. C. Rocha, Emmanuelle Le Chatelier, Charles Burdet, for the PrediRes study group

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