The promises of large language models for protein design and modeling by Giorgio Valentini, Giorgio Valentini, Dario Malchiodi, Jessica Gliozzo, Jessica Gliozzo, Marco Mesiti, Mauricio Soto-Gomez, Alberto Cabri, Justin Reese, Elena Casiraghi, Elena Casiraghi, Elena Casiraghi, Peter N. Robinson

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A Survey on Digital Twin: Definitions, Characteristics, Applications, and Design Implications by Barbara Rita Barricelli, Elena Casiraghi, Daniela Fogli

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Variations in volume of emergency surgeries and emergency department access at a third level hospital in Milan, Lombardy, during the COVID-19 outbreak by Laura Castoldi, Monica Solbiati, Giorgio Costantino, Elena Casiraghi

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Automatic Abdominal Organ Segmentation from CT images by Elena Casiraghi, Paola Campadelli, Stella Pratissoli, Gabriele Lombardi

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Human Digital Twin for Fitness Management by Barbara Rita Barricelli, Elena Casiraghi, Jessica Gliozzo, Alessandro Petrini, Stefano Valtolina

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MIAQuant, a novel system for automatic segmentation, measurement, and localization comparison of different biomarkers from serialized histological slices by Elena Casiraghi, Mara Cossa, Veronica Huber, Licia Rivoltini, Matteo Tozzi, Antonello Villa, Barbara Vergani

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Boosting tissue-specific prediction of active cis-regulatory regions through deep learning and Bayesian optimization techniques by Luca Cappelletti, Alessandro Petrini, Jessica Gliozzo, Elena Casiraghi, Max Schubach, Martin Kircher, Giorgio Valentini

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Complex Data Imputation by Auto-Encoders and Convolutional Neural Networks—A Case Study on Genome Gap-Filling by Luca Cappelletti, Tommaso Fontana, Guido Walter Di Donato, Lorenzo Di Tucci, Elena Casiraghi, Giorgio Valentini

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A novel computational method for automatic segmentation, quantification and comparative analysis of immunohistochemically labeled tissue sections by Elena Casiraghi, Veronica Huber, Marco Frasca, Mara Cossa, Matteo Tozzi, Licia Rivoltini, Biagio Eugenio Leone, Antonello Villa, Barbara Vergani

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UNIPred-Web: a web tool for the integration and visualization of biomolecular networks for protein function prediction by Paolo Perlasca, Marco Frasca, Cheick Tidiane Ba, Marco Notaro, Alessandro Petrini, Elena Casiraghi, Giuliano Grossi, Jessica Gliozzo, Giorgio Valentini, Marco Mesiti

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Clinical Impact of a Protocol Involving Cone-Beam CT (CBCT), Fusion Imaging and Ablation Volume Prediction in Percutaneous Image-Guided Microwave Ablation in Patients with Hepatoce... by Pierpaolo Biondetti, Anna Maria Ierardi, Elena Casiraghi, Alessandro Caruso, Pasquale Grillo, Serena Carriero, Carolina Lanza, Salvatore Alessio Angileri, Angelo Sangiovanni, Massimo Iavarone, Giuseppe Guzzardi, Gianpaolo Carrafiello

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Abdominal Computed Tomography Imaging Findings in Hospitalized COVID-19 Patients: A Year-Long Experience and Associations Revealed by Explainable Artificial Intelligence by Alice Scarabelli, Massimo Zilocchi, Elena Casiraghi, Pierangelo Fasani, Guido Giovanni Plensich, Andrea Alessandro Esposito, Elvira Stellato, Alessandro Petrini, Justin Reese, Peter Robinson, Giorgio Valentini, Gianpaolo Carrafiello

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Relationship Between Distance Run Per Week, Omega-3 Index, and Arachidonic Acid (AA)/Eicosapentaenoic Acid (EPA) Ratio: An Observational Retrospective Study in Non-elite Runners by Sergio Davinelli, Sergio Davinelli, Graziamaria Corbi, Stefano Righetti, Elena Casiraghi, Francesco Chiappero, Serena Martegani, Riccardo Pina, Immaculata De Vivo, Immaculata De Vivo, Artemis P. Simopoulos, Giovanni Scapagnini

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Explainable Machine Learning for Early Assessment of COVID-19 Risk Prediction in Emergency Departments by Elena Casiraghi, Dario Malchiodi, Gabriella Trucco, Marco Frasca, Luca Cappelletti, Tommaso Fontana, Alessandro Andrea Esposito, Emanuele Avola, Alessandro Jachetti, Justin Reese, Alessandro Rizzi, Peter N. Robinson, Giorgio Valentini

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Predictive models of long COVIDResearch in context by Blessy Antony, Hannah Blau, Elena Casiraghi, Johanna J. Loomba, Tiffany J. Callahan, Bryan J. Laraway, Kenneth J. Wilkins, Corneliu C. Antonescu, Giorgio Valentini, Andrew E. Williams, Peter N. Robinson, Justin T. Reese, T.M. Murali, Christopher Chute

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Image-Guided Intraoperative Assessment of Surgical Margins in Oral Cavity Squamous Cell Cancer: A Diagnostic Test Accuracy Review by Giorgia Carnicelli, Luca Disconzi, Michele Cerasuolo, Elena Casiraghi, Guido Costa, Armando De Virgilio, Andrea Alessandro Esposito, Fabio Ferreli, Federica Fici, Antonio Lo Casto, Silvia Marra, Luca Malvezzi, Giuseppe Mercante, Giuseppe Spriano, Guido Torzilli, Marco Francone, Luca Balzarini, Caterina Giannitto

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Frozen Section Analysis and Real-Time Magnetic Resonance Imaging of Surgical Specimen Oriented on 3D Printed Tongue Model to Assess Surgical Margins in Oral Tongue Carcinoma: Preli... by Caterina Giannitto, Giuseppe Mercante, Giuseppe Mercante, Luca Disconzi, Luca Disconzi, Riccardo Boroni, Elena Casiraghi, Federica Canzano, Michele Cerasuolo, Francesca Gaino, Armando De Virgilio, Armando De Virgilio, Barbara Fiamengo, Fabio Ferreli, Fabio Ferreli, Andrea Alessandro Esposito, Paolo Oliva, Flavio Ronzoni, Luigi Terracciano, Luigi Terracciano, Giuseppe Spriano, Giuseppe Spriano, Luca Balzarini

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NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study by Justin T. Reese, Ben Coleman, Lauren Chan, Hannah Blau, Tiffany J. Callahan, Luca Cappelletti, Tommaso Fontana, Katie R. Bradwell, Nomi L. Harris, Elena Casiraghi, Giorgio Valentini, Guy Karlebach, Rachel Deer, Julie A. McMurry, Melissa A. Haendel, Christopher G. Chute, Emily Pfaff, Richard Moffitt, Heidi Spratt, Jasvinder A. Singh, Christopher J. Mungall, Andrew E. Williams, Peter N. Robinson

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An open source knowledge graph ecosystem for the life sciences by Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner, Lawrence E. Hunter

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Ontologizing health systems data at scale: making translational discovery a reality by Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner, Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Asiyah Y. Lin, Blake Martin, Nicolas A. Matentzoglu, Daniella Meeker, Justin Reese, Jessica Sinclair, Sanya B. Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingmin A. Zhang, Joshua C. Denny, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Melissa A. Haendel, Peter N. Robinson, Lawrence E. Hunter, Michael G. Kahn

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