Optimized workflow for single-cell transcriptomics on infectious diseases including COVID-19 by Elena De Domenico, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Matthias Becker, Kristian Händler, Joachim L. Schultze

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Analysis of the early response to spinal cord injury identified a key role for mTORC1 signaling in the activation of neural stem progenitor cells by Johany Peñailillo, Miriam Palacios, Constanza Mounieres, Rosana Muñoz, Paula G. Slater, Elena De Domenico, Ilya Patrushev, Mike Gilchrist, Juan Larraín

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Neutrophils in COVID-19 by Nico Reusch, Nico Reusch, Elena De Domenico, Elena De Domenico, Lorenzo Bonaguro, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Jonas Schulte-Schrepping, Kevin Baßler, Kevin Baßler, Joachim L. Schultze, Joachim L. Schultze, Joachim L. Schultze, Anna C. Aschenbrenner, Anna C. Aschenbrenner, Anna C. Aschenbrenner, Anna C. Aschenbrenner

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Macrophage-induced enteric neurodegeneration leads to motility impairment during gut inflammation by Mona Breßer, Kevin D Siemens, Linda Schneider, Jonah E Lunnebach, Patrick Leven, Tim R Glowka, Kristin Oberländer, Elena De Domenico, Joachim L Schultze, Joachim Schmidt, Jörg C Kalff, Anja Schneider, Sven Wehner, Reiner Schneider

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Chromatin accessibility profiling of targeted cell populations with laser capture microdissection coupled to ATAC-seq by Caterina Carraro, Lorenzo Bonaguro, Rachana Srinivasa, Martina van Uelft, Victoria Isakzai, Jonas Schulte-Schrepping, Prerna Gambhir, Tarek Elmzzahi, Jessica V. Montgomery, Hannah Hayer, Yuanfang Li, Heidi Theis, Michael Kraut, Krishnaa T. Mahbubani, Anna C. Aschenbrenner, Ireen König, Eugenio Fava, Hans-Ulrich Fried, Elena De Domenico, Marc Beyer, Adem Saglam, Joachim L. Schultze

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Alveolar macrophages in early stage COPD show functional deviations with properties of impaired immune activation by Kevin Baßler, Wataru Fujii, Theodore S. Kapellos, Erika Dudkin, Nico Reusch, Ari Horne, Benedikt Reiz, Malte D. Luecken, Collins Osei-Sarpong, Stefanie Warnat-Herresthal, Lorenzo Bonaguro, Lorenzo Bonaguro, Lorenzo Bonaguro, Jonas Schulte-Schrepping, Allon Wagner, Allon Wagner, Patrick Günther, Carmen Pizarro, Tina Schreiber, Rainer Knoll, Rainer Knoll, Rainer Knoll, Lisa Holsten, Charlotte Kröger, Charlotte Kröger, Elena De Domenico, Elena De Domenico, Matthias Becker, Matthias Becker, Kristian Händler, Kristian Händler, Christian T. Wohnhaas, Florian Baumgartner, Meike Köhler, Heidi Theis, Heidi Theis, Michael Kraut, Michael Kraut, Marc H. Wadsworth, Marc H. Wadsworth, Travis K. Hughes, Humberto J. Ferreira, Emily Hinkley, Emily Hinkley, Ines H. Kaltheuner, Matthias Geyer, Christoph Thiele, Alex K. Shalek, Alex K. Shalek, Andreas Feißt, Daniel Thomas, Henning Dickten, Marc Beyer, Marc Beyer, Marc Beyer, Patrick Baum, Nir Yosef, Nir Yosef, Nir Yosef, Nir Yosef, Anna C. Aschenbrenner, Anna C. Aschenbrenner, Anna C. Aschenbrenner, Thomas Ulas, Thomas Ulas, Thomas Ulas, Jan Hasenauer, Jan Hasenauer, Fabian J. Theis, Fabian J. Theis, Dirk Skowasch, Joachim L. Schultze, Joachim L. Schultze, Joachim L. Schultze

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Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease by Theodore S. Kapellos, Kevin Baßler, Wataru Fujii, Christina Nalkurthi, Anna C. Schaar, Lorenzo Bonaguro, Tal Pecht, Izabela Galvao, Shobhit Agrawal, Adem Saglam, Erica Dudkin, Amit Frishberg, Elena de Domenico, Arik Horne, Chantal Donovan, Richard Y. Kim, David Gallego-Ortega, Tessa E. Gillett, Meshal Ansari, Jonas Schulte-Schrepping, Nina Offermann, Ignazio Antignano, Burcu Sivri, Wenying Lu, Mathew S. Eapen, Martina van Uelft, Collins Osei-Sarpong, Maarten van den Berge, Hylke C. Donker, Harry J.M. Groen, Sukhwinder S. Sohal, Johanna Klein, Tina Schreiber, Andreas Feißt, Ali Önder Yildirim, Herbert B. Schiller, Martijn C. Nawijn, Matthias Becker, Kristian Händler, Marc Beyer, Melania Capasso, Thomas Ulas, Jan Hasenauer, Carmen Pizarro, Fabian J. Theis, Philip M. Hansbro, Dirk Skowasch, Joachim L. Schultze

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Disease severity-specific neutrophil signatures in blood transcriptomes stratify COVID-19 patients by Anna C. Aschenbrenner, Maria Mouktaroudi, Benjamin Krämer, Marie Oestreich, Nikolaos Antonakos, Melanie Nuesch-Germano, Konstantina Gkizeli, Lorenzo Bonaguro, Nico Reusch, Kevin Baßler, Maria Saridaki, Rainer Knoll, Tal Pecht, Theodore S. Kapellos, Sarandia Doulou, Charlotte Kröger, Miriam Herbert, Lisa Holsten, Arik Horne, Ioanna D. Gemünd, Nikoletta Rovina, Shobhit Agrawal, Kilian Dahm, Martina van Uelft, Anna Drews, Lena Lenkeit, Niklas Bruse, Jelle Gerretsen, Jannik Gierlich, Matthias Becker, Kristian Händler, Michael Kraut, Heidi Theis, Simachew Mengiste, Elena De Domenico, Jonas Schulte-Schrepping, Lea Seep, Jan Raabe, Christoph Hoffmeister, Michael ToVinh, Verena Keitel, Gereon Rieke, Valentina Talevi, Dirk Skowasch, N. Ahmad Aziz, Peter Pickkers, Frank L. van de Veerdonk, Mihai G. Netea, Joachim L. Schultze, Matthijs Kox, Monique M. B. Breteler, Jacob Nattermann, Antonia Koutsoukou, Evangelos J. Giamarellos-Bourboulis, Thomas Ulas, German COVID-19 Omics Initiative (DeCOI)

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