Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler. by Daniel R Zerbino, Gayle K McEwen, Elliott H Margulies, Ewan Birney

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A bioinformatics approach for determining sample identity from different lanes of high-throughput sequencing data. by Rachel L Goldfeder, Stephen C J Parker, Subramanian S Ajay, Hatice Ozel Abaan, Elliott H Margulies

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Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection. by Yoichiro Shibata, Nathan C Sheffield, Olivier Fedrigo, Courtney C Babbitt, Matthew Wortham, Alok K Tewari, Darin London, Lingyun Song, Bum-Kyu Lee, Vishwanath R Iyer, Stephen C J Parker, Elliott H Margulies, Gregory A Wray, Terrence S Furey, Gregory E Crawford

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Mutational signatures of de-differentiation in functional non-coding regions of melanoma genomes. by Stephen C J Parker, Jared Gartner, Isabel Cardenas-Navia, Xiaomu Wei, Hatice Ozel Abaan, Subramanian S Ajay, Nancy F Hansen, Lingyun Song, Umesh K Bhanot, J Keith Killian, Yevgeniy Gindin, Robert L Walker, Paul S Meltzer, James C Mullikin, Terrence S Furey, Gregory E Crawford, Steven A Rosenberg, Yardena Samuels, Elliott H Margulies

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