Advancing Genome-Resolved Metagenomics beyond the Shotgun Autor Rex R. Malmstrom, Emiley A. Eloe-Fadrosh

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Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity Autor Simon Roux, Joanne B. Emerson, Emiley A. Eloe-Fadrosh, Matthew B. Sullivan

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Conjugal vectors for cloning, expression, and insertional mutagenesis in Gram-negative bacteria Autor Federico M. Lauro, Emiley A. Eloe, Nicoletta Liverani, Giulio Bertoloni, Douglas H. Bartlett

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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing Autor Samuel E. Barnett, Rob Egan, Brian Foster, Emiley A. Eloe-Fadrosh, Daniel H. Buckley

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Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem Autor Clement Coclet, Patrick O. Sorensen, Ulas Karaoz, Shi Wang, Eoin L. Brodie, Emiley A. Eloe-Fadrosh, Simon Roux

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Ecotype diversity and conversion in Photobacterium profundum strains. Autor Federico M Lauro, Emiley A Eloe-Fadrosh, Taylor K S Richter, Nicola Vitulo, Steven Ferriera, Justin H Johnson, Douglas H Bartlett

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Correction to: Towards a balanced view of the bacterial tree of life Autor Frederik Schulz, Emiley A. Eloe-Fadrosh, Robert M. Bowers, Jessica Jarett, Torben Nielsen, Natalia N. Ivanova, Nikos C. Kyrpides, Tanja Woyke

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Towards a balanced view of the bacterial tree of life Autor Frederik Schulz, Emiley A. Eloe-Fadrosh, Robert M. Bowers, Jessica Jarett, Torben Nielsen, Natalia N. Ivanova, Nikos C. Kyrpides, Tanja Woyke

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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils Autor Gareth Trubl, Simon Roux, Natalie Solonenko, Yueh-Fen Li, Benjamin Bolduc, Josué Rodríguez-Ramos, Emiley A. Eloe-Fadrosh, Virginia I. Rich, Matthew B. Sullivan

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Genomic variation and biogeography of Antarctic haloarchaea Autor Bernhard Tschitschko, Susanne Erdmann, Matthew Z. DeMaere, Simon Roux, Pratibha Panwar, Michelle A. Allen, Timothy J. Williams, Sarah Brazendale, Alyce M. Hancock, Emiley A. Eloe-Fadrosh, Ricardo Cavicchioli

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Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures Autor Scott C. Thomas, Kevin O. Tamadonfar, Cale O. Seymour, Dengxun Lai, Jeremy A. Dodsworth, Senthil K. Murugapiran, Emiley A. Eloe-Fadrosh, Paul Dijkstra, Brian P. Hedlund, Brian P. Hedlund

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Differential response of the cynomolgus macaque gut microbiota to Shigella infection. Autor Anna M Seekatz, Aruna Panda, David A Rasko, Franklin R Toapanta, Emiley A Eloe-Fadrosh, Abdul Q Khan, Zhenqiu Liu, Steven T Shipley, Louis J Detolla, Marcelo B Sztein, Claire M Fraser

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Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption Autor Emiley A. Eloe-Fadrosh, Arthur Brady, Jonathan Crabtree, Elliott F. Drabek, Bing Ma, Anup Mahurkar, Jacques Ravel, Miriam Haverkamp, Anne-Maria Fiorino, Christine Botelho, Irina Andreyeva, Patricia L. Hibberd, Claire M. Fraser

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Going deeper: metagenome of a hadopelagic microbial community. Autor Emiley A Eloe, Douglas W Fadrosh, Mark Novotny, Lisa Zeigler Allen, Maria Kim, Mary-Jane Lombardo, Joyclyn Yee-Greenbaum, Shibu Yooseph, Eric E Allen, Roger Lasken, Shannon J Williamson, Douglas H Bartlett

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Optimizing de novo genome assembly from PCR-amplified metagenomes Autor Simon Roux, Gareth Trubl, Danielle Goudeau, Nandita Nath, Estelle Couradeau, Nathan A. Ahlgren, Yuanchao Zhan, David Marsan, Feng Chen, Jed A. Fuhrman, Trent R. Northen, Matthew B. Sullivan, Virginia I. Rich, Rex R. Malmstrom, Emiley A. Eloe-Fadrosh

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Terabase-Scale Coassembly of a Tropical Soil Microbiome Autor Robert Riley, Robert M. Bowers, Antonio Pedro Camargo, Ashley Campbell, Rob Egan, Emiley A. Eloe-Fadrosh, Brian Foster, Steven Hofmeyr, Marcel Huntemann, Matthew Kellom, Jeffrey A. Kimbrel, Leonid Oliker, Katherine Yelick, Jennifer Pett-Ridge, Asaf Salamov, Neha J. Varghese, Alicia Clum

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A standardized quantitative analysis strategy for stable isotope probing metagenomics Autor Dariia Vyshenska, Pranav Sampara, Kanwar Singh, Andy Tomatsu, W. Berkeley Kauffman, Erin E. Nuccio, Steven J. Blazewicz, Jennifer Pett-Ridge, Katherine B. Louie, Neha Varghese, Matthew Kellom, Alicia Clum, Robert Riley, Simon Roux, Emiley A. Eloe-Fadrosh, Ryan M. Ziels, Rex R. Malmstrom

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Diversity and Distribution of a Novel Genus of Hyperthermophilic Aquificae Viruses Encoding a Proof-Reading Family-A DNA Polymerase Autor Marike Palmer, Brian P. Hedlund, Brian P. Hedlund, Simon Roux, Philippos K. Tsourkas, Philippos K. Tsourkas, Ryan K. Doss, Casey Stamereilers, Astha Mehta, Jeremy A. Dodsworth, Michael Lodes, Scott Monsma, Tijana Glavina del Rio, Thomas W. Schoenfeld, Emiley A. Eloe-Fadrosh, David A. Mead

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Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community Autor Pratibha Panwar, Michelle A. Allen, Timothy J. Williams, Alyce M. Hancock, Sarah Brazendale, James Bevington, Simon Roux, David Páez-Espino, Stephen Nayfach, Maureen Berg, Frederik Schulz, I-Min A. Chen, Marcel Huntemann, Nicole Shapiro, Nikos C. Kyrpides, Tanja Woyke, Emiley A. Eloe-Fadrosh, Ricardo Cavicchioli

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DOE JGI Metagenome Workflow Autor Alicia Clum, Marcel Huntemann, Brian Bushnell, Brian Foster, Bryce Foster, Simon Roux, Patrick P. Hajek, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Yuko Yoshinaga, Ronan O’Malley, Rekha Seshadri, Nikos C. Kyrpides, Emiley A. Eloe-Fadrosh, I-Min A. Chen, Alex Copeland, Natalia N. Ivanova

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