Bedaquiline resistance probability to guide treatment decision making for rifampicin-resistant tuberculosis: insights from a qualitative study by Pham Hien Trang Tu, Degefaye Zelalem Anlay, Anzaan Dippenaar, Emilyn Costa Conceição, Jasna Loos, Annelies Van Rie

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Mycobacterium tuberculosis spoligotypes and drug-resistant characterization from Beira compared to genotypes circulating in Mozambique by Lívia Maria Pala Anselmo, Emilyn Costa Conceição, Evangelina Namburete, Cinara Feliciano, Silvana Spindola, Christophe Sola, Valdes Roberto Bollela

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Description of new species of Mycobacterium terrae complex isolated from sewage at the São Paulo zoological park foundation in Brazil by Camila Lopes Romagnoli, Emilyn Costa Conceição, Emilyn Costa Conceição, Edson Machado, Leonardo Bruno Paz Ferreira Barreto, Abhinav Sharma, Natalia Maria Silva, Lucas Evangelista Marques, Maria Aparecida Juliano, Maria Cristina da Silva Lourenço, Luciano Antonio Digiampietri, Philip Noel Suffys, Sylvia Cardoso Leão, Cristina Viana-Niero

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Genomic Diversity of the Rarely Observed Genotype of the <i>Mycobacterium tuberculosis</i> Central Asian (CAS) Lineage 3 from North Brazil by Emilyn Costa Conceição, Marília Lima da Conceição, Davi Josué Marcon, Johannes Loubser, Gabrielly Leite Andrade, Sandro Patroca da Silva, Ana Cecília Ribeiro Cruz, Abhinav Sharma, Philip Suffys, Karla Valéria Batista Lima

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Factors Associated with Tuberculosis Outcome in a Hyperendemic City in the North of Brazil by Gabriel Fazzi Costa, Juliana Conceição Dias Garcez, Weber Marcos, Ana Lúcia da Silva Ferreira, Jorge Alberto Azevedo Andrade, Yan Corrêa Rodrigues, Luana Nepomuceno Gondim Costa Lima, Emilyn Costa Conceição, Karla Valéria Batista Lima

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Sequencing Mycobacteria and Algorithm-determined Resistant Tuberculosis Treatment (SMARTT): a study protocol for a phase IV pragmatic randomized controlled patient management strat... by Annelies Van Rie, Elise De Vos, Emilyn Costa, Lennert Verboven, Felex Ndebele, Tim H. Heupink, Steven Abrams, SMARTT team, Boitumelo Fanampe, Anneke Van der Spoel Van Dyk, Salome Charalambous, Gavin Churchyard, Rob Warren

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Surveillance Quality Indicators Highlight the Need for Improving Tuberculosis Diagnostics and Monitoring in a Hyperendemic Area of the Brazilian Amazon Region by Juliana Conceição Dias Garcez, Daniele Melo Sardinha, Emilyn Costa Conceição, Gabriel Fazzi Costa, Ianny Ferreira Raiol Sousa, Cristal Ribeiro Mesquita, Wellington Caldas do Carmo, Yan Corra Rodrigues, Luana Nepomuceno Gondim Costa Lima, Karla Valéria Batista Lima

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Spatial Analysis of Tuberculosis Patient Flow in a Neglected Region of Northern Brazil by Cristal Ribeiro Mesquita, Marília Lima da Conceição, Rafael Aleixo Coelho de Oliveira, Emilyn Costa Conceição, Juliana Conceição Dias Garcez, Ianny Ferreira Raiol Sousa, Luana Nepomuceno Gondim Costa Lima, Karla Valéria Batista Lima, Ricardo José de Paula Souza e Guimarães

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New insights on tuberculosis transmission dynamics and drug susceptibility profiles among the prison population in Southern Brazil based on whole-genome sequencing by Lívia Maria Pala Anselmo, Juliana Failde Gallo, Juliana Maira Watanabe Pinhata, Kamila Chagas Peronni, Wilson Araújo da Silva Junior, Patricia de Cássia Ruy, Emilyn Costa Conceição, Anzaan Dippenaar, Robin Mark Warren, Aline Aparecida Monroe, Rosangela Siqueira Oliveira, Valdes Roberto Bollela

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Evaluation of drug susceptibility profile of Mycobacterium tuberculosis Lineage 1 from Brazil based on whole genome sequencing and phenotypic methods by Arthur Emil dos Santos Guimarães, Abhinav Sharma, Ismari Perini Furlaneto, Liliana Rutaihwa, Jedson Ferreira Cardoso, Marília Lima da Conceição, Lizânia Borges Spinassé, Edson Machado, Maria Luiza Lopes, Rafael Silva Duarte, Sebastien Gagneux, Philip Noel Suffys, Karla Valéria Batista Lima, Emilyn Costa Conceição

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Actinomycetoma with systemic features: A warning sign for immunosuppression? by Rita Fernanda Cortez de Almeida, Roberta Espírito Santo Correia, Andréa Gina Varón, Janice Mery Chicarino de Oliveira Coelho, Ana Paola de Oliveira, Maria Cristina Silva Lourenço, Erica Aparecida Dos Santos Ribeiro da Silva, Emilyn Costa Conceição, Cristiane da Cruz Lamas, Dayvison Francis Saraiva Freitas

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The Role of GeneXpert^® for Tuberculosis Diagnostics in Brazil: An Examination from a Historical and Epidemiological Perspective by Tirça Naiara da Silva Iúdice, Marília Lima da Conceição, Artemir Coelho de Brito, Nicole Menezes de Souza, Cristal Ribeiro Mesquita, Ricardo José de Paula Souza e Guimarães, Ismari Perini Furlaneto, Alessandra de Souza Saboia, Maria Cristina da Silva Lourenço, Karla Valéria Batista Lima, Emilyn Costa Conceição

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Molecular epidemiology of Mycobacterium tuberculosis in Brazil before the whole genome sequencing era: a literature review by Emilyn Costa Conceição, Richard Steiner Salvato, Karen Machado Gomes, Arthur Emil dos Santos Guimarães, Marília Lima da Conceição, Ricardo José de Paula Souza e Guimarães, Abhinav Sharma, Ismari Perini Furlaneto, Regina Bones Barcellos, Valdes Roberto Bollela, Lívia Maria Pala Anselmo, Maria Carolina Sisco, Cristina Viana Niero, Lucilaine Ferrazoli, Guislaine Refrégier, Maria Cristina da Silva Lourenço, Harrison Magdinier Gomes, Artemir Coelho de Brito, Marcos Catanho, Rafael Silva Duarte, Philip Noel Suffys, Karla Valéria Batista Lima

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Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim [version 1; peer review: 2 approved] by Fabrizio Menardo, Liliana K. Rutaihwa, Michaela Zwyer, Sonia Borrell, Iñaki Comas, Emilyn Costa Conceição, Mireia Coscolla, Helen Cox, Moses Joloba, Horng-Yunn Dou, Julia Feldmann, Lukas Fenner, Janet Fyfe, Qian Gao, Darío García de Viedma, Alberto L. Garcia-Basteiro, Sebastian M. Gygli, Jerry Hella, Hellen Hiza, Levan Jugheli, Lujeko Kamwela, Midori Kato-Maeda, Qingyun Liu, Serej D. Ley, Chloe Loiseau, Surakameth Mahasirimongkol, Bijaya Malla, Prasit Palittapongarnpim, Niaina Rakotosamimanana, Voahangy Rasolofo, Miriam Reinhard, Klaus Reither, Mohamed Sasamalo, Rafael Silva Duarte, Christophe Sola, Philip Suffys, Karla Valeria Batista Lima, Dorothy Yeboah-Manu, Christian Beisel, Daniela Brites, Sebastien Gagneux

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Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim [version 2; peer review: 3 approved] by Fabrizio Menardo, Liliana K. Rutaihwa, Michaela Zwyer, Sonia Borrell, Iñaki Comas, Emilyn Costa Conceição, Mireia Coscolla, Helen Cox, Moses Joloba, Horng-Yunn Dou, Julia Feldmann, Lukas Fenner, Janet Fyfe, Qian Gao, Darío García de Viedma, Alberto L. Garcia-Basteiro, Sebastian M. Gygli, Jerry Hella, Hellen Hiza, Levan Jugheli, Lujeko Kamwela, Midori Kato-Maeda, Qingyun Liu, Serej D. Ley, Chloe Loiseau, Surakameth Mahasirimongkol, Bijaya Malla, Prasit Palittapongarnpim, Niaina Rakotosamimanana, Voahangy Rasolofo, Miriam Reinhard, Klaus Reither, Mohamed Sasamalo, Rafael Silva Duarte, Christophe Sola, Philip Suffys, Karla Valeria Batista Lima, Dorothy Yeboah-Manu, Christian Beisel, Daniela Brites, Sebastien Gagneux

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