Resilience to emerging infectious diseases and the importance of scientific innovation door Catherine Wilson, Emma C. Thomson

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Quasispecies Changes with Distinctive Point Mutations in the Hepatitis C Virus Internal Ribosome Entry Site (IRES) Derived from PBMCs and Plasma door Luca Mercuri, Emma C. Thomson, Joseph Hughes, Peter Karayiannis

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Emerging Rhabdoviruses and Human Infection door James G. Shepherd, Chris Davis, Daniel G. Streicker, Emma C. Thomson

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GLUE: a flexible software system for virus sequence data door Joshua B. Singer, Emma C. Thomson, John McLauchlan, Joseph Hughes, Robert J. Gifford

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Lassa Virus Circulation in Small Mammal Populations in Bo District, Sierra Leone door Umaru Bangura, Jacob Buanie, Joyce Lamin, Christopher Davis, Gédéon Ngiala Bongo, Michael Dawson, Rashid Ansumana, Dianah Sondufu, Emma C. Thomson, Foday Sahr, Elisabeth Fichet-Calvet

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Prevalence of Crimean-Congo haemorrhagic fever in livestock following a confirmed human case in Lyantonde district, Uganda door Stella A. Atim, Marc Niebel, Shirin Ashraf, Patrick Vudriko, Steven Odongo, Stephen Balinandi, Peace Aber, Ronald Bameka, Anna R. Ademun, Charles Masembe, Robert Tweyongyere, Emma C. Thomson

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Paper microfluidic implementation of loop mediated isothermal amplification for early diagnosis of hepatitis C virus door Weronika Witkowska McConnell, Chris Davis, Suleman R. Sabir, Alice Garrett, Amanda Bradley-Stewart, Pawel Jajesniak, Julien Reboud, Gaolian Xu, Zhugen Yang, Rory Gunson, Emma C. Thomson, Jonathan M. Cooper

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Analysis of an Ebola virus disease survivor whose host and viral markers were predictive of death indicates the effectiveness of medical countermeasures and supportive care door Andrew Bosworth, Natasha Y. Rickett, Xiaofeng Dong, Lisa F. P. Ng, Isabel García-Dorival, David A. Matthews, Tom Fletcher, Michael Jacobs, Emma C. Thomson, Miles W. Carroll, Julian A. Hiscox

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Identification and distribution of Rhipicephalus microplus in selected high-cattle density districts in Uganda: signaling future demand for novel tick control approaches door Patrick Etiang, Stella A. Atim, Joseph Nkamwesiga, David Nalumenya, Charles Byaruhanga, Steven Odongo, Patrick Vudriko, Anna Rose Ademun, Savino Biryomumaisho, Joseph Erume, Charles Masembe, Emma C. Thomson, Dennis Muhanguzi, Robert Tweyongyere

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Tracking TCRβ sequence clonotype expansions during antiviral therapy using high-throughput sequencing of the hypervariable region door Mark W Robinson, Mark W Robinson, Joseph eHughes, Gavin S Wilkie, Rachael eSwann, Rachael eSwann, Stephen T Barclay, Peter R Mills, Arvind H Patel, Emma C Thomson, John eMcLauchlan

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Glasgow Early Treatment Arm Favirpiravir (GETAFIX) for adults with early stage COVID-19: A structured summary of a study protocol for a randomised controlled trial door Catherine R. Hanna, Kevin G. Blyth, Glenn Burley, Samantha Carmichael, Carol Evans, Samantha Hinsley, Ibrahim Khadra, Saye Khoo, Liz-Anne Lewsley, Robert R. Jones, Raman Sharma, Andrea Taladriz-Sender, Emma C. Thomson, Janet T. Scott

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Characterisation of a Hepatitis C Virus Subtype 2a Cluster in Scottish PWID with a Suboptimal Response to Glecaprevir/Pibrentasvir Treatment door Rajiv Shah, Stephen T. Barclay, Erica S. Peters, Ray Fox, Rory Gunson, Amanda Bradley-Stewart, Samantha J. Shepherd, Alasdair MacLean, Lily Tong, Vera Jannie Elisabeth van Vliet, Michael Ngan Chiu Bong, Ana Filipe, Emma C. Thomson, Chris Davis

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Circulation of Lassa virus across the endemic Edo-Ondo axis, Nigeria, with cross-species transmission between multimammate mice door Adetunji Samuel Adesina, Akinlabi Oyeyiola, Adeoba Obadare, Joseph Igbokwe, Chukwuyem Abejegah, Patience Akhilomen, Umaru Bangura, Danny Asogun, Ekaete Tobin, Olufemi Ayodeji, Omolaja Osoniyi, Chris Davis, Emma C. Thomson, Meike Pahlmann, Stephan Günther, Elisabeth Fichet-Calvet, Ayodeji Olayemi

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Seoul Virus Associated with Pet Rats, Scotland, UK, 2019 door James G. Shepherd, Andrew E. Blunsum, Stephen Carmichael, Katherine Smollett, Hector Maxwell-Scott, Eoghan C.W. Farmer, Jane Osborne, Alasdair MacLean, Shirin Ashraf, Rajiv Shah, Rory Gunson, Ana da Silva Filipe, Emma J. Aarons, Emma C. Thomson

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Interpreting Viral Deep Sequencing Data with GLUE door Joshua B. Singer, Emma C. Thomson, Joseph Hughes, Elihu Aranday-Cortes, John McLauchlan, Ana da Silva Filipe, Lily Tong, Carmen F. Manso, Robert J. Gifford, David L. Robertson, Eleanor Barnes, M. Azim Ansari, Jean L. Mbisa, David F. Bibby, Daniel Bradshaw, David Smith

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Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data door Oliver Stirrup, Joseph Hughes, Matthew Parker, David G Partridge, James G Shepherd, James Blackstone, Francesc Coll, Alexander Keeley, Benjamin B Lindsey, Aleksandra Marek, Christine Peters, Joshua B Singer, The COVID-19 Genomics UK (COG-UK) consortium, Asif Tamuri, Thushan I de Silva, Emma C Thomson, Judith Breuer

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In vitro selection of Remdesivir resistance suggests evolutionary predictability of SARS-CoV-2. door Agnieszka M Szemiel, Andres Merits, Richard J Orton, Oscar A MacLean, Rute Maria Pinto, Arthur Wickenhagen, Gauthier Lieber, Matthew L Turnbull, Sainan Wang, Wilhelm Furnon, Nicolas M Suarez, Daniel Mair, Ana da Silva Filipe, Brian J Willett, Sam J Wilson, Arvind H Patel, Emma C Thomson, Massimo Palmarini, Alain Kohl, Meredith E Stewart

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Reduced neutralisation of the Delta (B.1.617.2) SARS-CoV-2 variant of concern following vaccination. door Chris Davis, Nicola Logan, Grace Tyson, Richard Orton, William T Harvey, Jonathan S Perkins, Guy Mollett, Rachel M Blacow, COVID-19 Genomics UK (COG-UK) Consortium, Thomas P Peacock, Wendy S Barclay, Peter Cherepanov, Massimo Palmarini, Pablo R Murcia, Arvind H Patel, David L Robertson, John Haughney, Emma C Thomson, Brian J Willett, COVID-19 DeplOyed VaccinE (DOVE) Cohort Study investigators

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Interferon lambda 4 impacts the genetic diversity of hepatitis C virus door M Azim Ansari, Elihu Aranday-Cortes, Camilla LC Ip, Ana da Silva Filipe, Siu Hin Lau, Connor Bamford, David Bonsall, Amy Trebes, Paolo Piazza, Vattipally Sreenu, Vanessa M Cowton, STOP-HCV Consortium, Emma Hudson, Rory Bowden, Arvind H Patel, Graham R Foster, William L Irving, Kosh Agarwal, Emma C Thomson, Peter Simmonds, Paul Klenerman, Chris Holmes, Eleanor Barnes, Chris CA Spencer, John McLauchlan, Vincent Pedergnana

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Widespread human exposure to ledanteviruses in Uganda: A population study. door James G Shepherd, Shirin Ashraf, Jesus F Salazar-Gonzalez, Maria G Salazar, Robert G Downing, Henry Bukenya, Hanna Jerome, Joseph T Mpanga, Chris Davis, Lily Tong, Vattipally B Sreenu, Linda A Atiku, Nicola Logan, Ezekiel Kajik, Yafesi Mukobi, Cyrus Mungujakisa, Michael V Olowo, Emmanuel Tibo, Fred Wunna, Hollie Jackson Ireland, Andrew E Blunsum, Iyanuoluwani Owolabi, Ana da Silva Filipe, Josephine Bwogi, Brian J Willett, Julius J Lutwama, Daniel G Streicker, Pontiano Kaleebu, Emma C Thomson

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