Practical strategies for discovering regulatory DNA sequence motifs. by Kenzie D MacIsaac, Ernest Fraenkel

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Adaptive bias correction for improved subseasonal forecasting by Soukayna Mouatadid, Paulo Orenstein, Genevieve Flaspohler, Judah Cohen, Miruna Oprescu, Ernest Fraenkel, Lester Mackey

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Integrative analysis reveals a conserved role for the amyloid precursor protein in proteostasis during aging by Vanitha Nithianandam, Hassan Bukhari, Matthew J. Leventhal, Rachel A. Battaglia, Xianjun Dong, Ernest Fraenkel, Mel B. Feany

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Comparative proteomic analysis highlights metabolic dysfunction in α-synucleinopathy by Souvarish Sarkar, Michael A. Murphy, Eric B. Dammer, Abby L. Olsen, Srikant Rangaraju, Ernest Fraenkel, Mel B. Feany

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NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency by Andrea D. Matlock, Vineet Vaibhav, Ronald Holewinski, Vidya Venkatraman, Victoria Dardov, Danica-Mae Manalo, Brandon Shelley, Loren Ornelas, Maria Banuelos, Berhan Mandefro, Renan Escalante-Chong, Jonathan Li, Steve Finkbeiner, Ernest Fraenkel, Jeffrey Rothstein, Leslie Thompson, Dhruv Sareen, Clive N. Svendsen, NIH NeuroLINCS Consortium, Jennifer E. Van Eyk

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Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage by David R. Ghasemi, Konstantin Okonechnikov, Anne Rademacher, Stephan Tirier, Kendra K. Maass, Hanna Schumacher, Piyush Joshi, Maxwell P. Gold, Julia Sundheimer, Britta Statz, Ahmet S. Rifaioglu, Katharina Bauer, Sabrina Schumacher, Michele Bortolomeazzi, Felice Giangaspero, Kati J. Ernst, Steven C. Clifford, Julio Saez-Rodriguez, David T. W. Jones, Daisuke Kawauchi, Ernest Fraenkel, Jan-Philipp Mallm, Karsten Rippe, Andrey Korshunov, Stefan M. Pfister, Kristian W. Pajtler

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Huntington disease oligodendrocyte maturation deficits revealed by single-nucleus RNAseq are rescued by thiamine-biotin supplementation by Ryan G. Lim, Osama Al-Dalahmah, Jie Wu, Maxwell P. Gold, Jack C. Reidling, Guomei Tang, Miriam Adam, David K. Dansu, Hye-Jin Park, Patrizia Casaccia, Ricardo Miramontes, Andrea M. Reyes-Ortiz, Alice Lau, Richard A. Hickman, Fatima Khan, Fahad Paryani, Alice Tang, Kenneth Ofori, Emily Miyoshi, Neethu Michael, Nicolette McClure, Xena E. Flowers, Jean Paul Vonsattel, Shawn Davidson, Vilas Menon, Vivek Swarup, Ernest Fraenkel, James E. Goldman, Leslie M. Thompson

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Developmental basis of SHH medulloblastoma heterogeneity by Maxwell P. Gold, Winnie Ong, Andrew M. Masteller, David R. Ghasemi, Julie Anne Galindo, Noel R. Park, Nhan C. Huynh, Aneesh Donde, Veronika Pister, Raul A. Saurez, Maria C. Vladoiu, Grace H. Hwang, Tanja Eisemann, Laura K. Donovan, Adam D. Walker, Joseph Benetatos, Christelle Dufour, Livia Garzia, Rosalind A. Segal, Robert J. Wechsler-Reya, Jill P. Mesirov, Andrey Korshunov, Kristian W. Pajtler, Scott L. Pomeroy, Olivier Ayrault, Shawn M. Davidson, Jennifer A. Cotter, Michael D. Taylor, Ernest Fraenkel

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A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses by Sean M. Gross, Mark A. Dane, Rebecca L. Smith, Kaylyn L. Devlin, Ian C. McLean, Daniel S. Derrick, Caitlin E. Mills, Kartik Subramanian, Alexandra B. London, Denis Torre, John Erol Evangelista, Daniel J. B. Clarke, Zhuorui Xie, Cemal Erdem, Nicholas Lyons, Ted Natoli, Sarah Pessa, Xiaodong Lu, James Mullahoo, Jonathan Li, Miriam Adam, Brook Wassie, Moqing Liu, David F. Kilburn, Tiera A. Liby, Elmar Bucher, Crystal Sanchez-Aguila, Kenneth Daily, Larsson Omberg, Yunguan Wang, Connor Jacobson, Clarence Yapp, Mirra Chung, Dusica Vidovic, Yiling Lu, Stephan Schurer, Albert Lee, Ajay Pillai, Aravind Subramanian, Malvina Papanastasiou, Ernest Fraenkel, Heidi S. Feiler, Gordon B. Mills, Jake D. Jaffe, Avi Ma’ayan, Marc R. Birtwistle, Peter K. Sorger, James E. Korkola, Joe W. Gray, Laura M. Heiser

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Revealing disease-associated pathways and components by systematic integration of large-scale biological data by Pirhaji, Leila

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Systems biology of diet-induced hepatic insulin resistance by Soltis, Anthony Robert

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Integrating Omics data : a new software tool and its use in implicating therapeutic targets in Huntington's disease by Kedaigle, Amanda Joy

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Using network inference to discover molecular pathways underlying cytokine synergism and age-related neurodegeneration by Hwang, Bryce

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Understanding neurodegenerative disease-relevant molecular effects of perturbagens using a multi-omics approach by Patel-Murray, Natasha L.(Natasha Leanna)

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Cancer systems biology : functional insights and therapeutic strategies for medulloblastoma from omic data integration by Ehrenberger, Tobias.

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Motifs, binding, and expression : computational studies of transcriptional regulation by MacIsaac, Kenzie D. (Kenzie Daniel), 1975-

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A constraint optimization framework for discovery of cellular signaling and regulatory networks by Huang, Shao-shan Carol

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Transcriptional regulation of adipose insulin resistance by Lo, Kin Yui Alice

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Recognizing epigenetic patterns that mark the control of cell state in differentiation and disease by Ng, Christopher W

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