Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues by Ernst, Jason, Kellis, Manolis

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Chromatin-state discovery and genome annotation with ChromHMM by Ernst, Jason, Kellis, Manolis

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Discovery and characterization of chromatin states for systematic annotation of the human genome by Ernst, Jason, Kellis, Manolis

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Discovery and characterization of chromatin states for systematic annotation of the human genome by Ernst, Jason, Kellis, Manolis

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Common Variants at 9p21 and 8q22 Are Associated with Increased Susceptibility to Optic Nerve Degeneration in Glaucoma by Ernst, Jason, Kellis, Manolis

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Discovery and characterization of chromatin states for systematic annotation of the human genome by Ernst, Jason, Kellis, Manolis

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Comprehensive analysis of the chromatin landscape in Drosophila melanogaster by Ernst, Jason, Kellis, Manolis

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Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types by Kellis, Manolis, Ernst, Jason

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ChromHMM: automating chromatin-state discovery and characterization by Ernst, Jason, Kellis, Manolis

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Evidence of reduced recombination rate in human regulatory domains by Ernst, Jason, Liu, Yaping, Sarkar, Abhishek Kulshreshtha, Kheradpour, Pouya, Kellis, Manolis

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Distinct and Predictive Histone Lysine Acetylation Patterns at Promoters, Enhancers, and Gene Bodies by Rajagopal, Nisha, Kellis, Manolis, Ernst, Jason, Ray, Pradipta, Wu, Jie, Zhang, Michael, Ren, Bing

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Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions by Ernst, Jason, Melnikov, Alexandre, Zhang, Xiaolan, Wang, Li, Rogov, Peter L, Mikkelsen, Tarjei, Kellis, Manolis

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IL-3 and Oncogenic Abl Regulate the Myeloblast Transcriptome by Alt= Stability by Ernst, Jason, Ghanem, Louis, Bar-Joseph, Ziv, McNamara, Michael, Brown, Jason, Steinman, Richard A.

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A High-Resolution Map of Human Evolutionary Constraint Using 29 Mammals by Mag Washietl, Stefan, Kheradpour, Pouya, Ernst, Jason, Ward, Lucas D., Jungreis, Irwin, Rasmussen, Matthew D., Kellis, Manolis

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Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay by Kheradpour, Pouya, Kellis, Manolis, Ernst, Jason, Melnikov, Alexandre, Rogov, Peter, Wang, Li, Zhang, Xiaolan, Alston, Jessica, Mikkelsen, Tarjei Sigurd

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Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps by Kellis, Manolis, Mortazavi, Ali, Pepke, Shirley, Jansen, Camden, Marinov, Georgi K., Ernst, Jason, Hardison, Ross C., Myers, Richard M., Wold, Barbara J.

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Linking DNA Methyltransferases to Epigenetic Marks and Nucleosome Structure Genome-wide in Human Tumor Cells by Jin, Bilian, Ernst, Jason, Tiedemann, Rochelle L., Xu, Hongyan, Sureshchandra, Suhas, Kellis, Manolis, Dalton, Stephen, Liu, Chen, Choi, Jeong-Hyeon, Robertson, Keith D.

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An integrated encyclopedia of DNA elements in the human genome by Altshuler, Robert Charles, Ernst, Jason, Kellis, Manolis, Kheradpour, Pouya, Ward, Lucas D., Eaton, Matthew Lucas, Hendrix, David A., Jungreis, Irwin, Lin, Michael F., Washietl, Stefan

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Mapping and Analysis of Chromatin State Dynamics in Nine Human Cell Types by Ernst, Jason, Kheradpour, Pouya, Mikkelsen, Tarjei Sigurd, Shoresh, Noam, Ward, Lucas D., Epstein, Charles B., Zhang, Xiaolan, Wang, Li, Issner, Robbyn, Coyne, Michael J., Ku, Manching, Durham, Timothy, Kellis, Manolis, Bernstein, Bradley E.

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Integrative annotation of chromatin elements from ENCODE data by Ernst, Jason, Kellis, Manolis, Hoffman, Michael M., Wilder, Steven P., Kundaje, Anshul, Harris, Robert S., Libbrecht, Max, Giardine, Belinda, Ellenbogen, Paul M., Bilmes, Jeffrey A., Birney, Ewan, Hardison, Ross C., Dunham, Ian, Noble, William Stafford

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