A critical comparison of topology-based pathway analysis methods. by Ivana Ihnatova, Vlad Popovici, Eva Budinska

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Stool sampling and DNA isolation kits affect DNA quality and bacterial composition following 16S rRNA gene sequencing using MiSeq Illumina platform by Petra Videnska, Kristyna Smerkova, Barbora Zwinsova, Vlad Popovici, Lenka Micenkova, Karel Sedlar, Eva Budinska

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Profiling Tryptophan Catabolites of Human Gut Microbiota and Acute-Phase Protein Levels in Neonatal Dried Blood Specimens by Anne-Christine Aust, Eliska Benesova, Veronika Vidova, Katerina Coufalikova, Sona Smetanova, Ivo Borek, Petr Janku, Eva Budinska, Jana Klanova, Vojtech Thon, Zdenek Spacil

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Correction: Enrichment of human nasopharyngeal bacteriome with bacteria from dust after short‑term exposure to indoor environment: a pilot study by Eva Konecna, Petra Videnska, Lucie Buresova, Milan Urik, Sona Smetanova, Stanislav Smatana, Roman Prokes, Barbara Lanickova, Eva Budinska, Jana Klanova, Petra Borilova Linhartova

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Enrichment of human nasopharyngeal bacteriome with bacteria from dust after short-term exposure to indoor environment: a pilot study by Eva Konecna, Petra Videnska, Lucie Buresova, Milan Urik, Sona Smetanova, Stanislav Smatana, Roman Prokes, Barbara Lanickova, Eva Budinska, Jana Klanova, Petra Borilova Linhartova

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Circulating T cell subsets are associated with clinical outcome of anti-VEGF-based 1st-line treatment of metastatic colorectal cancer patients: a prospective study with focus on pr... by Beatrix Bencsikova, Eva Budinska, Iveta Selingerova, Katerina Pilatova, Lenka Fedorova, Kristina Greplova, Rudolf Nenutil, Dalibor Valik, Radka Obermannova, Michael A. Sheard, Lenka Zdrazilova-Dubska

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Impact of intrapartum antibiotic prophylaxis on the oral and fecal bacteriomes of children in the first week of life by Eliska Pivrncova, Lucie Buresova, Iva Kotaskova, Petra Videnska, Lenka Andryskova, Pavel Piler, Petr Janku, Ivo Borek, Jan Bohm, Jana Klanova, Eva Budinska, Petra Borilova Linhartova

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An invasion front gene expression signature for higher-risk patient selection in stage IIA MSS colon cancer by Eva Budinská, Martina Čarnogurská, Tina Catela Ivković, Táňa Macháčková, Táňa Macháčková, Marie Boudná, Marie Boudná, Lucie Pifková, Lucie Pifková, Ondřej Slabý, Ondřej Slabý, Beatrix Bencsiková, Vlad Popovici

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Resistome in the indoor dust samples from workplaces and households: a pilot study by Eva Klvanova, Petra Videnska, Vojtech Barton, Jan Bohm, Petra Splichalova, Viktorie Koksova, Milan Urik, Milan Urik, Barbara Lanickova, Barbara Lanickova, Barbara Lanickova, Roman Prokes, Roman Prokes, Eva Budinska, Jana Klanova, Petra Borilova Linhartova

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Multiple regulatory events contribute to a widespread circular RNA downregulation in precancer and early stage of colorectal cancer development by Alessandro Camandona, Amedeo Gagliardi, Nicola Licheri, Sonia Tarallo, Giulia Francescato, Eva Budinska, Martina Carnogurska, Barbora Zwinsová, Barbara Martinoglio, Lorenzo Franchitti, Gaetano Gallo, Santina Cutrupi, Michele De Bortoli, Barbara Pardini, Alessio Naccarati, Giulio Ferrero

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Cross-species analysis of genetically engineered mouse models of MAPK-driven colorectal cancer identifies hallmarks of the human disease by Peter J. Belmont, Eva Budinska, Ping Jiang, Mark J. Sinnamon, Erin Coffee, Jatin Roper, Tao Xie, Paul A. Rejto, Sahra Derkits, Owen J. Sansom, Mauro Delorenzi, Sabine Tejpar, Kenneth E. Hung, Eric S. Martin

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Molecular portraits of colorectal cancer morphological regions by Eva Budinská, Martina Hrivňáková, Tina Catela Ivkovic, Marie Madrzyk, Rudolf Nenutil, Beatrix Bencsiková, Dagmar Al Tukmachi, Michaela Ručková, Lenka Zdražilová Dubská, Ondřej Slabý, Josef Feit, Mihnea-Paul Dragomir, Petra Borilova Linhartova, Sabine Tejpar, Vlad Popovici

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Trial watch : the gut microbiota as a tool to boost the clinical efficacy of anticancer immunotherapy by Romain Daillère, Lisa Derosa, Mélodie Bonvalet, Nicola Segata, Bertrand Routy, Manuela Gariboldi, Eva Budinská, I. Jolanda M. De Vries, Alessio Gordon Naccarati, Valérie Zitvogel, Carlos Caldas, Lars Engstrand, Sibylle Loilbl, Jacques Fieschi, Lucie Heinzerling, Guido Kroemer, Laurence Zitvogel

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A comprehensive characterization of genome-wide copy number aberrations in colorectal cancer reveals novel oncogenes and patterns of alterations. by Tao Xie, Giovanni D' Ario, John R Lamb, Eric Martin, Kai Wang, Sabine Tejpar, Mauro Delorenzi, Fred T Bosman, Arnaud D Roth, Pu Yan, Stephanie Bougel, Antonio Fabio Di Narzo, Vlad Popovici, Eva Budinská, Mao Mao, Scott L Weinrich, Paul A Rejto, J Graeme Hodgson

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Heterogenous mutation spectrum and deregulated cellular pathways in aberrant plasma cells underline molecular pathology of light-chain amyloidosis by Zuzana Chyra, Tereza Sevcikova, Petr Vojta, Janka Puterova, Lucie Brozova, Katerina Growkova, Jana Filipova, Martina Zatopkova, Sebastian Grosicki, Agnieszka Barchnicka, Wieslaw Wiktor Jedrzejczak, Anna Waszczuk-Gajda, Alexandra Jungova, Aneta Mikulasova, Marian Hajduch, Martin Mokrejs, Ludek Pour, Martin Stork, Lubica Harvanova, Martin Mistrik, Gabor Mikala, Pawel Robak, Anna Czyz, Jakub Debski, Lidia Usnarska-Zubkiewicz, Artur Jurczyszyn, Lukas Stejskal, Gareth Morgan, Fedor Kryukov, Eva Budinska, Michal Simicek, Tomas Jelinek, Matous Hrdinka, Roman Hajek

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