MSF: Modulated Sub-graph Finder [version 3; peer review: 1 approved, 2 approved with reservations] by Mariam R. Farman, Ivo L. Hofacker, Fabian Amman

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MSF: Modulated Sub-graph Finder [version 2; peer review: 1 approved, 2 approved with reservations] by Mariam R. Farman, Ivo L. Hofacker, Fabian Amman

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ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelines [v2; ref status: indexed, http://f1000r.es/5mq] by Michael T. Wolfinger, Jörg Fallmann, Florian Eggenhofer, Fabian Amman

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Impact of Hfq on the Bacillus subtilis transcriptome. by Hermann Hämmerle, Fabian Amman, Branislav Večerek, Jörg Stülke, Ivo Hofacker, Udo Bläsi

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Nascent RNA signaling to yeast RNA Pol II during transcription elongation. by Eva Klopf, Murielle Moes, Fabian Amman, Bob Zimmermann, Frederike von Pelchrzim, Christina Wagner, Renée Schroeder

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Enhancing the Cell-Free Expression of Native Membrane Proteins by In Silico Optimization of the Coding Sequence—An Experimental Study of the Human Voltage-Dependent Anion Channel by Sonja Zayni, Samar Damiati, Susana Moreno-Flores, Fabian Amman, Ivo Hofacker, David Jin, Eva-Kathrin Ehmoser

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Alterations of the transcriptome of Sulfolobus acidocaldarius by exoribonuclease aCPSF2. by Birgit Märtens, Fabian Amman, Salim Manoharadas, Lukas Zeichen, Alvaro Orell, Sonja-Verena Albers, Ivo Hofacker, Udo Bläsi

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Negative Control of RpoS Synthesis by the sRNA ReaL in Pseudomonas aeruginosa by Hue Thi Bach Nguyen, David Romero A., Fabian Amman, Theresa Sorger-Domenigg, Muralidhar Tata, Elisabeth Sonnleitner, Udo Bläsi

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Rewiring of Gene Expression in Pseudomonas aeruginosa During Diauxic Growth Reveals an Indirect Regulation of the MexGHI-OpmD Efflux Pump by Hfq by Marlena Rozner, Ella Nukarinen, Michael T. Wolfinger, Michael T. Wolfinger, Fabian Amman, Wolfram Weckwerth, Wolfram Weckwerth, Udo Bläsi, Elisabeth Sonnleitner

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VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples by Askar Gafurov, Andrej Baláž, Fabian Amman, Kristína Boršová, Viktória Čabanová, Boris Klempa, Andreas Bergthaler, Tomáš Vinař, Broňa Brejová

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The Anaerobically Induced sRNA PaiI Affects Denitrification in Pseudomonas aeruginosa PA14 by Muralidhar Tata, Fabian Amman, Vinay Pawar, Vinay Pawar, Michael T. Wolfinger, Siegfried Weiss, Susanne Häussler, Susanne Häussler, Udo Bläsi

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Avirulent phenotype promotes Bordetella pertussis adaptation to the intramacrophage environment by Mariam R. Farman, Denisa Petráčková, Dilip Kumar, Jakub Držmíšek, Argha Saha, Ivana Čurnová, Jan Čapek, Václava Hejnarová, Fabian Amman, Ivo Hofacker, Branislav Večerek

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