Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data by Savvas Kinalis, Finn Cilius Nielsen, Ole Winther, Frederik Otzen Bagger

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Interpretable Autoencoders Trained on Single Cell Sequencing Data Can Transfer Directly to Data from Unseen Tissues by Julie Sparholt Walbech, Savvas Kinalis, Ole Winther, Finn Cilius Nielsen, Frederik Otzen Bagger

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Benchmarking full-length transcript single cell mRNA sequencing protocols by Victoria Probst, Arman Simonyan, Felix Pacheco, Yuliu Guo, Finn Cilius Nielsen, Frederik Otzen Bagger

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Whole genome sequencing in clinical practice by Frederik Otzen Bagger, Line Borgwardt, Andreas Sand Jespersen, Anna Reimer Hansen, Birgitte Bertelsen, Miyako Kodama, Finn Cilius Nielsen

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Neoepitope load, T cell signatures and PD-L2 as combined biomarker strategy for response to checkpoint inhibition immunotherapy by Annie Borch, Anne-Mette Bjerregaard, Anne-Mette Bjerregaard, Vinicius Araujo Barbosa de Lima, Olga Østrup, Christina Westmose Yde, Aron Charles Eklund, Morten Mau-Sørensen, Carolina Barra, Inge Marie Svane, Finn Cilius Nielsen, Finn Cilius Nielsen, Samuel A. Funt, Ulrik Lassen, Sine Reker Hadrup

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The Incidence, Survival, and HPV Impact of Second Primary Cancer following Primary Oropharyngeal Squamous Cell Carcinoma: A 20-Year Retrospective and Population-Based Study by Lasse Andersen, Kathrine Kronberg Jakobsen, Amanda-Louise Fenger Carlander, Martin Garset-Zamani, Jeppe Friborg, Katalin Kiss, Rasmus L. Marvig, Caroline Olsen, Finn Cilius Nielsen, Elo Andersen, Christian Grønhøj, Christian von Buchwald

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Genomic alterations in the stepwise progression from normal mucosa to metastasizing oral squamous cell carcinoma by Jakob Myllerup Jensen, Sannia Mia Svenningsen Sjöstedt, Sannia Mia Svenningsen Sjöstedt, Sannia Mia Svenningsen Sjöstedt, Javiera Laing Carmona, Lise Barlebo Ahlborn, Filipe Garrett Vieira, Finn Cilius Nielsen, Katalin Kiss, Christian Grønhøj, Christian von Buchwald

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Targeting the tumor mutanome for personalized vaccination in a TMB low non-small cell lung cancer by Chuan Wang, Kaïdre Bendjama, Stephen Schoenberger, Oliver Wood, Gareth Thomas, Pandurangan Vijayanand, Tilman Sanchez-Elsner, Nathalie Silvestre, Natalia Savelyeva, Christian Ottensmeier, Katy McCann, Adrian von Witzleben, Jaya Thomas, Divya Singh, Konstantinos Boukas, Finn Cilius Nielsen, Jason Greenbaum, Bjoern Peters

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Replication of newly proposed TNM staging system for medullary thyroid carcinoma: a nationwide study by Jes Sloth Mathiesen, Jens Peter Kroustrup, Peter Vestergaard, Per Løgstrup Poulsen, Åse Krogh Rasmussen, Ulla Feldt-Rasmussen, Sten Schytte, Stefano Christian Londero, Henrik Baymler Pedersen, Christoffer Holst Hahn, Jens Bentzen, Sören Möller, Mette Gaustadnes, Maria Rossing, Finn Cilius Nielsen, Kim Brixen, Christian Godballe

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