A hierarchical poisson log-normal model for network inference from RNA sequencing data. by Mélina Gallopin, Andrea Rau, Florence Jaffrézic

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A unified framework for the integration of multiple hierarchical clusterings or networks from multi-source data by Audrey Hulot, Denis Laloë, Florence Jaffrézic

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Fast tree aggregation for consensus hierarchical clustering by Audrey Hulot, Julien Chiquet, Florence Jaffrézic, Guillem Rigaill

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Identification of marginal causal relationships in gene networks from observational and interventional expression data. by Gilles Monneret, Florence Jaffrézic, Andrea Rau, Tatiana Zerjal, Grégory Nuel

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Multi-omics data integration for the identification of biomarkers for bull fertility by Valentin Costes, Eli Sellem, Sylvain Marthey, Chris Hoze, Aurélie Bonnet, Laurent Schibler, Hélène Kiefer, Florence Jaffrezic

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Multi-omics data integration for the identification of biomarkers for bull fertility. by Valentin Costes, Eli Sellem, Sylvain Marthey, Chris Hoze, Aurélie Bonnet, Laurent Schibler, Hélène Kiefer, Florence Jaffrezic

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Fine-tuned adaptation of embryo-endometrium pairs at implantation revealed by transcriptome analyses in Bos taurus. by Fernando H Biase, Isabelle Hue, Sarah E Dickinson, Florence Jaffrezic, Denis Laloe, Harris A Lewin, Olivier Sandra

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Phenotypic and Molecular Alterations in the Mammary Tissue of R-Spondin1 Knock-Out Mice during Pregnancy. by Sead Chadi, Jacqueline Polyte, Lucas Lefevre, Johan Castille, Aude Ehanno, Johann Laubier, Florence Jaffrézic, Fabienne Le Provost

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PiQSARS: A pipeline for quantitative and statistical analyses of ratiometric fluorescent biosensors by Elise Lévy, Florence Jaffrézic, Denis Laloë, Human Rezaei, Meng-Er Huang, Vincent Béringue, Davy Martin, Laurence Vernis

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The genome response to artificial selection: a case study in dairy cattle. by Laurence Flori, Sébastien Fritz, Florence Jaffrézic, Mekki Boussaha, Ivo Gut, Simon Heath, Jean-Louis Foulley, Mathieu Gautier

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A novel family of beta mixture models for the differential analysis of DNA methylation data: An application to prostate cancer. by Koyel Majumdar, Romina Silva, Antoinette Sabrina Perry, Ronald William Watson, Andrea Rau, Florence Jaffrezic, Thomas Brendan Murphy, Isobel Claire Gormley

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Co-expression of host and viral microRNAs in porcine dendritic cells infected by the pseudorabies virus. by Anna Anselmo, Laurence Flori, Florence Jaffrezic, Teresa Rutigliano, Maria Cecere, Naima Cortes-Perez, François Lefèvre, Claire Rogel-Gaillard, Elisabetta Giuffra

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Potential genetic robustness of Prnp and Sprn double knockout mouse embryos towards ShRNA-lentiviral inoculation by Andrea Rau, Bruno Passet, Johan Castille, Nathalie Daniel-Carlier, Alexandre Asset, Jérome Lecardonnel, Marco Moroldo, Florence Jaffrézic, Denis Laloë, Katayoun Moazami-Goudarzi, Jean-Luc Vilotte

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Detection of new pathways involved in the acceptance and the utilisation of a plant-based diet in isogenic lines of rainbow trout fry. by Thérèse Callet, Mathilde Dupont-Nivet, Marianne Cluzeaud, Florence Jaffrezic, Denis Laloë, Thierry Kerneis, Laurent Labbé, Edwige Quillet, Inge Geurden, David Mazurais, Sandrine Skiba-Cassy, Françoise Médale

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Transcriptomic analysis brings new insight into the biological role of the prion protein during mouse embryogenesis. by Manal Khalifé, Rachel Young, Bruno Passet, Sophie Halliez, Marthe Vilotte, Florence Jaffrezic, Sylvain Marthey, Vincent Béringue, Daniel Vaiman, Fabienne Le Provost, Hubert Laude, Jean-Luc Vilotte

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Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout by Eloi R. Verrier, Carine Genet, Denis Laloë, Florence Jaffrezic, Andrea Rau, Diane Esquerre, Nicolas Dechamp, Céline Ciobotaru, Caroline Hervet, Francine Krieg, Luc Jouneau, Christophe Klopp, Edwige Quillet, Pierre Boudinot

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Overexpression of miR-30b in the developing mouse mammary gland causes a lactation defect and delays involution. by Sandrine Le Guillou, Nezha Sdassi, Johann Laubier, Bruno Passet, Marthe Vilotte, Johan Castille, Denis Laloë, Jacqueline Polyte, Stéphan Bouet, Florence Jaffrézic, Edmond-Paul Cribiu, Jean-Luc Vilotte, Fabienne Le Provost

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Prion protein and Shadoo are involved in overlapping embryonic pathways and trophoblastic development. by Bruno Passet, Rachel Young, Samira Makhzami, Marthe Vilotte, Florence Jaffrezic, Sophie Halliez, Stéphan Bouet, Sylvain Marthey, Manal Khalifé, Colette Kanellopoulos-Langevin, Vincent Béringue, Fabienne Le Provost, Hubert Laude, Jean-Luc Vilotte

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DNA methylation and transcription in a distal region upstream from the bovine AlphaS1 casein gene after once or twice daily milking. by Minh Nguyen, Marion Boutinaud, Barbara Pétridou, Anne Gabory, Maëlle Pannetier, Sophie Chat, Stephan Bouet, Luc Jouneau, Florence Jaffrezic, Denis Laloë, Christophe Klopp, Nicolas Brun, Clémence Kress, Hélène Jammes, Madia Charlier, Eve Devinoy

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Uncoupled embryonic and extra-embryonic tissues compromise blastocyst development after somatic cell nuclear transfer. by Séverine A Degrelle, Florence Jaffrezic, Evelyne Campion, Kim-Anh Lê Cao, Daniel Le Bourhis, Christophe Richard, Nathalie Rodde, Renaud Fleurot, Robin E Everts, Jérôme Lecardonnel, Yvan Heyman, Xavier Vignon, Xiangzhong Yang, Xiuchun C Tian, Harris A Lewin, Jean-Paul Renard, Isabelle Hue

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