Local Persistence of Novel MRSA Lineage after Hospital Ward Outbreak, Cambridge, UK, 2011–2013 by Michelle S. Toleman, Sandra Reuter, Francesc Coll, Ewan M. Harrison, Sharon J. Peacock

Get full text

Feasibility of informing syndrome-level empiric antibiotic recommendations using publicly available antibiotic resistance datasets [version 2; peer review: 2 approved, 1 approved w... by Quentin J. Leclerc, Nichola R. Naylor, Alexander M. Aiken, Francesc Coll, Gwenan M. Knight

Get full text

Imputation-based population genetics analysis of Plasmodium falciparum malaria parasites. by Hanif Samad, Francesc Coll, Mark D Preston, Harold Ocholla, Rick M Fairhurst, Taane G Clark

Get full text

Land abandonment, landscape, and biodiversity: questioning the restorative character of the forest transition in the Mediterranean by Iago Otero, Joan Marull, Enric Tello, Giovanna L. Diana, Manel Pons, Francesc Coll, Martí Boada

Get full text

PowerBacGWAS: a computational pipeline to perform power calculations for bacterial genome-wide association studies by Francesc Coll, Theodore Gouliouris, Sebastian Bruchmann, Jody Phelan, Kathy E. Raven, Taane G. Clark, Julian Parkhill, Sharon J. Peacock

Get full text

Genomic evaluation of phenotypic antibiotic susceptibility patterns as a surrogate for MRSA relatedness and putative transmission during outbreak investigations by Francesc Coll, Michelle S. Toleman, Ewan M. Harrison, Beth Blane, Dorota Jamrozy, Nicholas M. Brown, Julian Parkhill, Sharon J. Peacock

Get full text

The draft genome of Mycobacterium aurum , a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae by Jody Phelan, Arundhati Maitra, Ruth McNerney, Mridul Nair, Antima Gupta, Francesc Coll, Arnab Pain, Sanjib Bhakta, Taane G Clark

Get full text

Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England by Ewan M. Harrison, Francesc Coll, Michelle S. Toleman, Beth Blane, Nicholas M. Brown, M. Estee Török, Julian Parkhill, Sharon J. Peacock

Get full text

Whole genome sequencing-based characterization of extensively drug resistant (XDR) strains of Mycobacterium tuberculosis from Pakistan by Zahra Hasan, Asho Ali, Ruth McNerney, Kim Mallard, Grant Hill-Cawthorne, Francesc Coll, Mridul Nair, Arnab Pain, Taane G Clark, Rumina Hasan

Get full text

Whole genome sequencing based characterization of extensively drug-resistant Mycobacterium tuberculosis isolates from Pakistan. by Asho Ali, Zahra Hasan, Ruth McNerney, Kim Mallard, Grant Hill-Cawthorne, Francesc Coll, Mridul Nair, Arnab Pain, Taane G Clark, Rumina Hasan

Get full text

Characterization of genomic variations in SNPs of PE_PGRS genes reveals deletions and insertions in extensively drug resistant (XDR) M. tuberculosis strains from Pakistan by Akbar Kanji, Zahra Hasan, Asho Ali, Ruth McNerney, Kim Mallard, Francesc Coll, Grant Hill-Cawthorne, Mridul Nair, Taane G Clark, Ambreen Zaver, Sana Jafri, Rumina Hasan

Get full text

The mutational landscape of Staphylococcus aureus during colonisation by Francesc Coll, Beth Blane, Katherine L. Bellis, Marta Matuszewska, Toska Wonfor, Dorota Jamrozy, Michelle S. Toleman, Joan A. Geoghegan, Julian Parkhill, Ruth C. Massey, Sharon J. Peacock, Ewan M. Harrison

Get full text

Characterization of genomic variations in SNPs of PE_PGRS genes reveals deletions and insertions in extensively drug resistant (XDR) M. tuberculosis strains from Pakistan by Akbar Kanji, Zahra Hasan, Asho Ali, Ruth McNerney, Kim Mallard, Francesc Coll, Grant Hill-Cawthorne, Arnab Pain, Mridul Nair, Taane G Clark, Ambreen Zaver, Sana Jafri, Rumina Hasan

Get full text

Genomic diversity of drug-resistant Mycobacterium tuberculosis isolates in Lisbon Portugal: Towards tuberculosis genomic epidemiology by João Perdigão, Hugo Silva, Diana Machado, Rita Macedo, Fernando Maltez, Carla Silva, Luisa Jordao, Isabel Couto, Kim Mallard, Francesc Coll, Grant A Hill-Cawthorne, Ruth McNerney, Arnab Pain, Taane G Clark, Miguel Viveiros, Isabel Portugal

Get full text

Characteristics of <i>Staphylococcus aureus</i> Isolated from Patients in Busia County Referral Hospital, Kenya by Benear Apollo Obanda, Elizabeth A. J. Cook, Eric M. Fèvre, Lilly Bebora, William Ogara, Shu-Hua Wang, Wondwossen Gebreyes, Ronald Ngetich, Dolphine Wandede, Johnstone Muyodi, Beth Blane, Francesc Coll, Ewan M. Harrison, Sharon J. Peacock, George C. Gitao

Get full text

Multi-Drug Resistant <i>Staphylococcus aureus</i> Carriage in Abattoir Workers in Busia, Kenya by Benear Apollo Obanda, Cheryl L. Gibbons, Eric M. Fèvre, Lilly Bebora, George Gitao, William Ogara, Shu-Hua Wang, Wondwossen Gebreyes, Ronald Ngetich, Beth Blane, Francesc Coll, Ewan M. Harrison, Samuel Kariuki, Sharon J. Peacock, Elizabeth A. J. Cook

Get full text

One Health Genomic Surveillance of <named-content content-type="genus-species">Escherichia coli</named-content> Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolat... by Catherine Ludden, Kathy E. Raven, Dorota Jamrozy, Theodore Gouliouris, Beth Blane, Francesc Coll, Marcus de Goffau, Plamena Naydenova, Carolyne Horner, Juan Hernandez-Garcia, Paul Wood, Nazreen Hadjirin, Milorad Radakovic, Nicholas M. Brown, Mark Holmes, Julian Parkhill, Sharon J. Peacock

Get full text

Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis by Francesc Coll, PhD, Kathy E Raven, PhD, Gwenan M Knight, PhD, Beth Blane, BSc, Ewan M Harrison, PhD, Danielle Leek, BSc, David A Enoch, FRCPath, Nicholas M Brown, MD, Julian Parkhill, PhD, Sharon J Peacock, PhD

Get full text

Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing. by Taane G Clark, Kim Mallard, Francesc Coll, Mark Preston, Samuel Assefa, David Harris, Sam Ogwang, Francis Mumbowa, Bruce Kirenga, Denise M O'Sullivan, Alphonse Okwera, Kathleen D Eisenach, Moses Joloba, Stephen D Bentley, Jerrold J Ellner, Julian Parkhill, Edward C Jones-López, Ruth McNerney

Get full text

Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data by Oliver Stirrup, Joseph Hughes, Matthew Parker, David G Partridge, James G Shepherd, James Blackstone, Francesc Coll, Alexander Keeley, Benjamin B Lindsey, Aleksandra Marek, Christine Peters, Joshua B Singer, The COVID-19 Genomics UK (COG-UK) consortium, Asif Tamuri, Thushan I de Silva, Emma C Thomson, Judith Breuer

Get full text